Browse Element(s) Details


OsAffx.11902.1.S1_at

Description tigr:9630.m00448
TID=OsAffx.11902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0530011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05244Os.54263.1.S1_at11/112+2516858..2519230expressed protein
LOC_Os02g05244Os.54263.2.S1_x_at11/112+2516858..2519230expressed protein
LOC_Os02g05250NANA2+2521222..2522480expressed protein
LOC_Os02g05260OsAffx.20369.1.S1_at7/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05260Os.15499.1.S1_x_at1/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05270OsAffx.11899.1.S1_at11/112+2535305..2536173hypothetical protein
LOC_Os02g05280OsAffx.11900.1.S1_at11/112+2538168..2538668hypothetical protein
LOC_Os02g05290NANA2+2539904..2540692hypothetical protein
LOC_Os02g05300OsAffx.11902.1.S1_at11/112+2542088..2543950hypothetical protein
LOC_Os02g05310Os.50814.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.50814.2.S1_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310OsAffx.2514.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.35337.1.S1_at5/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05320Os.26890.1.A1_x_at10/112+2551634..2556276phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g05330Os.458.1.S1_at11/112+2557639..2561011Eukaryotic initiation factor 4A, putative, expressed
LOC_Os02g05340Os.14890.1.S1_at11/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05340Os.14890.1.S2_at10/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11902.1.S1_at--1143--6751Chr02:2542609..2542633 (25 bp)
GTTAATGCATCGCTGGGAACACCAA
LOC_Os02g05300
OsAffx.11902.1.S1_at--411--3331Chr02:2542468..2542492 (25 bp)
CACTCACAGTTTTTCATGGCATGCT
LOC_Os02g05300
OsAffx.11902.1.S1_at--248--4111Chr02:2542406..2542430 (25 bp)
CGAAGTGTTCAAGATGCTACCCTAT
LOC_Os02g05300
OsAffx.11902.1.S1_at--389--2871Chr02:2542367..2542391 (25 bp)
AAGTGGTCACTGGAAGGTACGTCTA
LOC_Os02g05300
OsAffx.11902.1.S1_at--409--2431Chr02:2542338..2542362 (25 bp)
AACACCCGTACCTTTGGTGGATGCT
LOC_Os02g05300
OsAffx.11902.1.S1_at--422--9111Chr02:2542317..2542341 (25 bp)
TGCTCCACAGTCAGTTTACATCCTA
LOC_Os02g05300
OsAffx.11902.1.S1_at--69--8911Chr02:2542277..2542301 (25 bp)
TGAGCAGTGCAGATACCGTCGGAAC
LOC_Os02g05300
OsAffx.11902.1.S1_at--572--7191Chr02:2542260..2542284 (25 bp)
GTCGGAACTACTCATGCCACAAGAT
LOC_Os02g05300
OsAffx.11902.1.S1_at--899--6271Chr02:2542186..2542210 (25 bp)
GATGTTGACATGCTGCTTTACCAAT
LOC_Os02g05300
OsAffx.11902.1.S1_at--390--10331Chr02:2542170..2542194 (25 bp)
TTTACCAATATCTACCCATGTCGCT
LOC_Os02g05300
OsAffx.11902.1.S1_at--659--771Chr02:2542153..2542177 (25 bp)
ATGTCGCTTCCTGGCTTAATGAGAG
LOC_Os02g05300
Target Sequence 
GTTAATGCATCGCTGGGAACACCAAGTTCGTGGGATATCTTAATTGAGGATTTTCAGGACTTACTGCAGATGTTAGAAAA
TCCCATCCTTGAGGAGGCTTATCTGATGAGAAACCACCCTGCTTTGCTTGCACTGAAACTGCACTCACAGTTTTTCATGG
CATGCTATGAAACATTGATGAGGGCATCACTTCAATCTGTGTTCGAAGTGTTCAAGATGCTACCCTATGGGATGAATGAT
TCAAGTGGTCACTGGAAGGTACGTCTAGAGCAACACCCGTACCTTTGGTGGATGCTCCACAGTCAGTTTACATCCTATGG
AGACAGAAACTCTGAGCAGTGCAGATACCGTCGGAACTACTCATGCCACAAGATTCATCATCTCACAAAAAGGACTGAAC
GATTCAAATGGTATTCTGCAAATGATGTTGACATGCTGCTTTACCAATATCTACCCATGTCGCTTCCTGGCTTAATGAGA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis