Browse Element(s) Details


Os.458.1.S1_at

Description gb:AB046414.1
DB_XREF= gi:12381895
GEN=eIF4A-2
TID=Os.458.1
CNT=48
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.458 (NCBI UniGene Cluster)
DEF=Oryza sativa eIF4A-2 mRNA for eukaryotic initiation factor 4A, complete cds.
PROD=eukaryotic initiation factor 4A
FL= gb:AK073620.1 gb:AB046414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0533011/11Eukaryotic initiation factor 4A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05260OsAffx.20369.1.S1_at7/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05260Os.15499.1.S1_x_at1/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05270OsAffx.11899.1.S1_at11/112+2535305..2536173hypothetical protein
LOC_Os02g05280OsAffx.11900.1.S1_at11/112+2538168..2538668hypothetical protein
LOC_Os02g05290NANA2+2539904..2540692hypothetical protein
LOC_Os02g05300OsAffx.11902.1.S1_at11/112+2542088..2543950hypothetical protein
LOC_Os02g05310Os.50814.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.50814.2.S1_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310OsAffx.2514.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.35337.1.S1_at5/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05320Os.26890.1.A1_x_at10/112+2551634..2556276phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g05330Os.458.1.S1_at11/112+2557639..2561011Eukaryotic initiation factor 4A, putative, expressed
LOC_Os02g05340Os.14890.1.S1_at11/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05340Os.14890.1.S2_at10/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05350OsAffx.2512.1.S1_x_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05350Os.11895.1.S1_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05360Os.11895.1.S1_at11/112+2575659..2577062expressed protein
LOC_Os02g05370Os.19983.1.S1_x_at7/112+2582087..2586130expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.458.1.S1_at--796--4391Chr02:2560415..2560439 (25 bp)
GCCACACATGGAGACATGGACCAGA
LOC_Os02g05330
Os.458.1.S1_at--28--7471Chr02:2560485..2560509 (25 bp)
GTGTGCTTATCACCACTGATCTGCT
LOC_Os02g05330
Os.458.1.S1_at--448--3871Chr02:2560500..2560524 (25 bp)
CTGATCTGCTTGCTCGTGGTATCGA
LOC_Os02g05330
Os.458.1.S1_at--288--10151Chr02:2560519..2560543 (25 bp)
TATCGATGTCCAGCAAGTCTCCCTT
LOC_Os02g05330
Os.458.1.S1_at--660--10491Chr02:2560632..2560656 (25 bp)
TTAACTTTGTCACCCGCGATGATGA
LOC_Os02g05330
Os.458.1.S1_at--711--7231Chr02:2560718..2560742 (25 bp)
GTCGCTGACCTTCTCTAGATTATGT
LOC_Os02g05330
Os.458.1.S1_at--371--10131Chr02:2560792..2560816 (25 bp)
TATGACCAACTTTCTCGTTTGGGAG
LOC_Os02g05330
Os.458.1.S1_at--387--10491Chr02:2560850..2560874 (25 bp)
TTAAGGACGGCTTCCATGTTTTTCT
LOC_Os02g05330
Os.458.1.S1_at--469--10571Chr02:2560871..2560895 (25 bp)
TTCTCTTTTCCGTATGCAACTATGT
LOC_Os02g05330
Os.458.1.S1_at--530--10811Chr02:2560906..2560930 (25 bp)
TTGTAGCTGTTAGGCTGTGCTGCTT
LOC_Os02g05330
Os.458.1.S1_at--943--5971Chr02:2560951..2560975 (25 bp)
GAGACACTACTGGAATATTTACTTT
LOC_Os02g05330
Target Sequence 
GCCACACATGGAGACATGGACCAGAACACTAGGGACATCATCATGAGGGAGTTCCGATCTGGTTCTTCCCGTGTGCTTAT
CACCACTGATCTGCTTGCTCGTGGTATCGATGTCCAGCAAGTCTCCCTTGTCATCAACTACGACCTGCCCACCCAGCCTG
AGAACTACCTCCATCGCATTGGTCGTAGTGGTCGGTTTGGCAGGAAGGGAGTTGCCATTAACTTTGTCACCCGCGATGAT
GAGAGGATGCTGTTCGACATCCAGAGGTTCTACAATGTGACCATCGAGGAGCTGCCGGCCAACGTCGCTGACCTTCTCTA
GATTATGTCTTAGGAAGTAAGGTTCTGGATAAAAGTTTGTTTTTGTTTTTGTTTTAATATGACCAACTTTCTCGTTTGGG
AGGAGTGGTAAGGACGGGGTCTANTTTGAATTGTGGTTAAGGACGGCTTCCATGTTTTTCTCTTTTCCGTATGCAACTAT
GTTTGGAAATTTTTGTAGCTGTTAGGCTGTGCTGCTTCCTGGGCTAGCTGGGAGAGGGAGACACTACTGGAATATTTACT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis