Browse Element(s) Details


Os.19983.1.S1_x_at

Description gb:AK059340.1
DB_XREF= gi:32969358
TID=Os.19983.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B04, full insert sequence.
FL= gb:AK059340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0544011/11expressed protein
LOC_Os02g053707/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05390Os.45173.1.S1_x_at5/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.46610.1.S1_x_at3/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390OsAffx.20877.1.S1_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.38764.1.S1_x_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05400Os.26890.1.A1_x_at4/112+2593931..2598268phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os02g05410NANA2+2600398..2603981Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05420OsAffx.25889.1.S1_at10/112+2607097..2611379expressed protein
LOC_Os02g05430Os.11895.1.S1_at11/112+2611618..2614085expressed protein
LOC_Os02g05430Os.11895.1.S2_at11/112+2611618..2614085expressed protein
LOC_Os02g05430OsAffx.2512.1.S1_x_at1/112+2611618..2614085expressed protein
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19983.1.S1_x_at--636--10392Chr02:2617828..2617852 (25 bp)
TTATTCAATTGGAACCCCAATCCAA
LOC_Os02g05440
Os.19983.1.S1_x_at--785--5432Chr02:2617839..2617863 (25 bp)
GAACCCCAATCCAATTTATTTGAAG
LOC_Os02g05440
Os.19983.1.S1_x_at--1098--5272Chr02:2618155..2618177 (23 bp)
GAAGGTACCCTTGATGGATTCACAT
LOC_Os02g05440
Os.19983.1.S1_x_at--697--7932Chr02:2618168..2618192 (25 bp)
GGATTCACATTTGATTCTGACGAGG
LOC_Os02g05440
Os.19983.1.S1_x_at--263--10612Chr02:2618182..2618206 (25 bp)
TTCTGACGAGGAGGGTGACAAGCTT
LOC_Os02g05440
Os.19983.1.S1_x_at--896--1872Chr02:2618187..2618211 (25 bp)
ACGAGGAGGGTGACAAGCTTCCTGA
LOC_Os02g05440
Os.19983.1.S1_x_at--667--4212Chr02:2618213..2618237 (25 bp)
CCGCATGCTTCTCAAAACGATCAAA
LOC_Os02g05440
Os.19983.1.S1_x_at--852--4571Chr02:2618641..2618665 (25 bp)
GCGAAGGTTGCAGGAAAGGCCACTA
LOC_Os02g05440
Os.19983.1.S1_x_at--479--6891Chr02:2618749..2618773 (25 bp)
GTAAAGACTAGAGAATCCAACTCCA
LOC_Os02g05440
Os.19983.1.S1_x_at--347--3591Chr02:2618890..2618914 (25 bp)
CATTTTTATGTCTATGAACTCTCTG
LOC_Os02g05440
Os.19983.1.S1_x_at--825--3691Chr02:2618916..2618940 (25 bp)
CTATCCTCATTTGTATGTTGTATAA
LOC_Os02g05440
Target Sequence 
TTATTCAATTGGAACCCCAATCCAATTTATTTGAAGCAGAGACTATGNTGGAAGGTACCCTTGATGGATTCACATTTGAT
TCTGACGAGGAGGGTGACAAGCTTCCTGANCCGCATGCTTCTCAAAACGATCAAAATAATGAAGATGGNGATCAACCTAA
GGCNAAAACCAAAAGAAAAGCTGAGAAACCGGCNGGGNAAGGGACAGAAGAAGGCGAAGGTTGCAGGAAAGGCCACTAAG
AAGGNTACAAGGAAAACCCAAACTACGAAGAGAACAAAGAAGGCGAAGAAATAGACCTGTNGCGAAACNGGGACNGCTNC
CAGTAAAGACTAGAGAATCCAACTCCAANTGGATCAGACTTGAGAAATTCCANATGTTGTATGATCTGGGTTNTCAGTGT
AGCATNATGTNCTTCTTTTNGGCGTAGAATGAAANTAGAAGGGATACACATGATTGCNAAAATCCATTTTTATGTCTATG
AACTCTCTGNCTATCCTCATTTGTATGTTGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19983.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis