Browse Element(s) Details


Os.25613.1.A1_at

Description gb:AK120401.1
DB_XREF= gi:37990024
TID=Os.25613.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.25613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088G22, full insert sequence.
FL= gb:AK120401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g054706/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05430Os.11895.1.S1_at11/112+2611618..2614085expressed protein
LOC_Os02g05430Os.11895.1.S2_at11/112+2611618..2614085expressed protein
LOC_Os02g05430OsAffx.2512.1.S1_x_at1/112+2611618..2614085expressed protein
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os02g05490Os.26369.1.S1_at11/112+2656063..2659126expressed protein
LOC_Os02g05500Os.7288.1.S1_at11/112+2659670..2663041Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os02g05510Os.6390.1.S1_at11/112+2664440..2668159GATA transcription factor 25, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045036biological_processprotein targeting to chloroplast
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25613.1.A1_at--592--8391NONE
GGCCGCCGAAGTGCGGGCTAAACTT
NONE
Os.25613.1.A1_at--373--4111NONE
CGAAGTGCGGGCTAAACTTGCAGAT
NONE
Os.25613.1.A1_at--434--5331NONE
GAAGTGCGGGCTAAACTTGCAGATA
NONE
Os.25613.1.A1_at--606--1131NONE
AGTGCGGGCTAAACTTGCAGATATT
NONE
Os.25613.1.A1_at--525--4671NONE
GCGGGCTAAACTTGCAGATATTGAT
NONE
Os.25613.1.A1_at--557--5031Chr02:2641408..2641432 (25 bp)
GCAGATATTGATCTGTTCCCTGAGA
LOC_Os02g05470
Os.25613.1.A1_at--237--1271Chr02:2641410..2641434 (25 bp)
AGATATTGATCTGTTCCCTGAGAAT
LOC_Os02g05470
Os.25613.1.A1_at--891--6511Chr02:2641411..2641435 (25 bp)
GATATTGATCTGTTCCCTGAGAATG
LOC_Os02g05470
Os.25613.1.A1_at--293--231Chr02:2641412..2641436 (25 bp)
ATATTGATCTGTTCCCTGAGAATGG
LOC_Os02g05470
Os.25613.1.A1_at--224--4191Chr02:2641425..2641449 (25 bp)
CCCTGAGAATGGAAATGGTGCTGGT
LOC_Os02g05470
Os.25613.1.A1_at--494--8611Chr02:2641440..2641464 (25 bp)
TGGTGCTGGTGGCATCAGGGAAGCC
LOC_Os02g05470
Target Sequence 
GGCCGCCGAAGTGCGGGCTAAACTTGCAGATATTGATCTGTTCCCTGAGAATGGAAATGGTGCTGGTGGCATCAGGGAAG
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25613.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis