Browse Element(s) Details


Os.6390.1.S1_at

Description gb:AK068931.1
DB_XREF= gi:32978955
TID=Os.6390.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003E02, full insert sequence.
FL= gb:AK068931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0551011/11GATA transcription factor 25, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os02g05490Os.26369.1.S1_at11/112+2656063..2659126expressed protein
LOC_Os02g05500Os.7288.1.S1_at11/112+2659670..2663041Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os02g05510Os.6390.1.S1_at11/112+2664440..2668159GATA transcription factor 25, putative, expressed
LOC_Os02g05520Os.50891.1.S1_at10/112+2668554..2671019expressed protein
LOC_Os02g05530NANA2+2674124..2676602expressed protein
LOC_Os02g05540OsAffx.11904.1.S1_at11/112+2679974..2680527hypothetical protein
LOC_Os02g05550OsAffx.442.1.S1_x_at5/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.2.S1_s_at5/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.4.S1_x_at4/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.4.S1_at4/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.2.S1_x_at3/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.1.S1_x_at2/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.24587.1.S1_x_at2/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.19052.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.442.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6390.1.S1_at--443--2191Chr02:2667294..2667315 (22 bp)
ACAAGGGTACGATGAGAGAGGTAAC
LOC_Os02g05510
Os.6390.1.S1_at--268--31Chr02:2667341..2667365 (25 bp)
ATTGTGCCAGCTGCAACCAATGATG
LOC_Os02g05510
Os.6390.1.S1_at--1090--5151Chr02:2667353..2667711 (25 bp)
GCAACCAATGATGTTCAGAACGGAA
LOC_Os02g05510
Os.6390.1.S1_at--537--10211Chr02:2668056..2668080 (25 bp)
TATTTTGCATTTTACTCTCTTGTCA
LOC_Os02g05510
Os.6390.1.S1_at--276--3771Chr02:2668070..2668094 (25 bp)
CTCTCTTGTCAGATGTAATCGTTGA
LOC_Os02g05510
Os.6390.1.S1_at--487--9751Chr02:2668085..2668109 (25 bp)
TAATCGTTGATTTACAGGTGACACT
LOC_Os02g05510
Os.6390.1.S1_at--711--9871Chr02:2668097..2668121 (25 bp)
TACAGGTGACACTGGGCAAGCAGGC
LOC_Os02g05510
Os.6390.1.S1_at--163--5171Chr02:2668112..2668136 (25 bp)
GCAAGCAGGCAGGTTAATTTCACAA
LOC_Os02g05510
Os.6390.1.S1_at--102--8251Chr02:2668119..2668143 (25 bp)
GGCAGGTTAATTTCACAATCGCAGC
LOC_Os02g05510
Os.6390.1.S1_at--76--6771Chr02:2668124..2668148 (25 bp)
GTTAATTTCACAATCGCAGCATCAG
LOC_Os02g05510
Os.6390.1.S1_at--73--10331Chr02:2668129..2668153 (25 bp)
TTTCACAATCGCAGCATCAGTGCAT
LOC_Os02g05510
Target Sequence 
ACAAGGGTACGATGAGAGAGGTAACAAAAGGTCCCCCTGTGCCNTTGCAAATTGTGCCAGCTGCAACCAATGATGTTCAG
AACGGAATCGTCGAGGCAACAGGTGTCGAGCAGCACAATTCTGCAGTCGAGGAGGCAGTTTCTGCTGCAAATGGCCATGA
ATCGCAGTCGGGAGTCGCGTGATGCTTGAGGGTTCAGACTTGAGAAAAAGGAGGAGGATGCGTATCAATCAACAATCAAG
TAGTCATGGTGCTCAACAAGTTAACCGGATGTATGATATGACCGGCTCTAGGATTCATGTGGTTCTGCAATGCCGGTCTC
TCCGAGATGATATATGCTTGTGGCCGGCTTTTTCTATGCTTGTATTTGAGTTTTATAGCTTTGCCTTTGGCAGTAGATAA
ATGGACGAGTTCAGCTTGAGCGCATGTGACATATTTTGCATTTTACTCTCTTGTCAGATGTAATCGTTGATTTACAGGTG
ACACTGGGCAAGCAGGCAGGTTAATTTCACAATCGCAGCATCAGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis