Browse Element(s) Details


OsAffx.11904.1.S1_at

Description tigr:9630.m00477
TID=OsAffx.11904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0554011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05490Os.26369.1.S1_at11/112+2656063..2659126expressed protein
LOC_Os02g05500Os.7288.1.S1_at11/112+2659670..2663041Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os02g05510Os.6390.1.S1_at11/112+2664440..2668159GATA transcription factor 25, putative, expressed
LOC_Os02g05520Os.50891.1.S1_at10/112+2668554..2671019expressed protein
LOC_Os02g05530NANA2+2674124..2676602expressed protein
LOC_Os02g05540OsAffx.11904.1.S1_at11/112+2679974..2680527hypothetical protein
LOC_Os02g05550OsAffx.442.1.S1_x_at5/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.2.S1_s_at5/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.4.S1_x_at4/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.4.S1_at4/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.2.S1_x_at3/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.1.S1_x_at2/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.24587.1.S1_x_at2/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.19052.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.442.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05560NANA2+2695687..2700301retrotransposon protein, putative, unclassified
LOC_Os02g05570OsAffx.10637.3.S1_s_at11/112+2702804..2706490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05570OsAffx.10637.1.S1_s_at11/112+2702804..2706490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g05570OsAffx.10637.4.S1_s_at8/112+2702804..2706490transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11904.1.S1_at--550--2431Chr02:2680008..2680031 (24 bp)
AAAAGACAATTCATGGCCCTTCATA
LOC_Os02g05540
OsAffx.11904.1.S1_at--1116--10531Chr02:2680017..2680107 (25 bp)
TTCATGGCCCTTCATATTGCTTCAA
LOC_Os02g05540
OsAffx.11904.1.S1_at--630--8411Chr02:2680022..2680112 (25 bp)
GGCCCTTCATATTGCTTCAACTATG
LOC_Os02g05540
OsAffx.11904.1.S1_at--184--10511Chr02:2680103..2680127 (25 bp)
TTCAACTATGGATACGATGGCCTCT
LOC_Os02g05540
OsAffx.11904.1.S1_at--892--6451Chr02:2680113..2680137 (25 bp)
GATACGATGGCCTCTGTAATGGTCA
LOC_Os02g05540
OsAffx.11904.1.S1_at--365--6231Chr02:2680118..2680142 (25 bp)
GATGGCCTCTGTAATGGTCAAGGTA
LOC_Os02g05540
OsAffx.11904.1.S1_at--1017--811Chr02:2680131..2680152 (22 bp)
ATGGTCAAGGTAACGCCCAGAGTGA
LOC_Os02g05540
OsAffx.11904.1.S1_at--712--2891Chr02:2680137..2680309 (25 bp)
AAGGTAACGCCCAGAGTGATCCAAA
LOC_Os02g05540
OsAffx.11904.1.S1_at--1080--3411Chr02:2680299..2680320 (22 bp)
CAGAGTGATCCAAACGCCAAAGGTG
LOC_Os02g05540
OsAffx.11904.1.S1_at--1061--2591Chr02:2680308..2680332 (25 bp)
AACGCCAAAGGTGGAATGACAGTTG
LOC_Os02g05540
OsAffx.11904.1.S1_at--886--8511Chr02:2680319..2680343 (25 bp)
TGGAATGACAGTTGAGGAGCAACCT
LOC_Os02g05540
Target Sequence 
AAAAGACAATTCATGGCCCTTCATATTGCTTCAACTATGGATACGATGGCCTCTGTAATGGTCAAGGTAACGCCCAGAGT
GATCCAAACGCCAAAGGTGGAATGACAGTTGAGGAGCAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis