Browse Element(s) Details


Os.26369.1.S1_at

Description gb:AK071342.1
DB_XREF= gi:32981365
TID=Os.26369.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 26603 myosin-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091H02, full insert sequence.
FL= gb:AK071342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0549011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os02g05490Os.26369.1.S1_at11/112+2656063..2659126expressed protein
LOC_Os02g05500Os.7288.1.S1_at11/112+2659670..2663041Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os02g05510Os.6390.1.S1_at11/112+2664440..2668159GATA transcription factor 25, putative, expressed
LOC_Os02g05520Os.50891.1.S1_at10/112+2668554..2671019expressed protein
LOC_Os02g05530NANA2+2674124..2676602expressed protein
LOC_Os02g05540OsAffx.11904.1.S1_at11/112+2679974..2680527hypothetical protein
LOC_Os02g05550OsAffx.442.1.S1_x_at5/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.2.S1_s_at5/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.4.S1_x_at4/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.4.S1_at4/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.2.S1_x_at3/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.1.S1_x_at2/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.24587.1.S1_x_at2/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.19052.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.442.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26369.1.S1_at--682--8691Chr02:2657956..2657980 (25 bp)
TGTGCTGCATGCATTGCTTGCTAGT
LOC_Os02g05490
Os.26369.1.S1_at--201--2691Chr02:2658627..2658650 (24 bp)
AAGCTGTAGTGATCTCCTTTGGTGA
LOC_Os02g05490
Os.26369.1.S1_at--927--6911Chr02:2658665..2658689 (25 bp)
GTATGTCTATACTCCATAGCAAGCT
LOC_Os02g05490
Os.26369.1.S1_at--365--10071Chr02:2658702..2658726 (25 bp)
TAGTCCGCGCTAATGTTGTTGATTC
LOC_Os02g05490
Os.26369.1.S1_at--128--1011Chr02:2658743..2658767 (25 bp)
AGGATACTCGTATTGGCAGCTGCGA
LOC_Os02g05490
Os.26369.1.S1_at--839--8251Chr02:2658757..2658781 (25 bp)
GGCAGCTGCGAATCAACTTCAGGTT
LOC_Os02g05490
Os.26369.1.S1_at--533--6631Chr02:2658779..2658803 (25 bp)
GTTGTCTTCGAGATGCATTTGTCCT
LOC_Os02g05490
Os.26369.1.S1_at--63--3591Chr02:2658794..2658818 (25 bp)
CATTTGTCCTGCCTCAGCTGGAATA
LOC_Os02g05490
Os.26369.1.S1_at--289--2331Chr02:2658850..2658874 (25 bp)
AAAGATCCCCTCTGTAAATACTCTC
LOC_Os02g05490
Os.26369.1.S1_at--558--2011Chr02:2658869..2658893 (25 bp)
ACTCTCATTTTTGTTTGCTCTATTC
LOC_Os02g05490
Os.26369.1.S1_at--759--8771Chr02:2658880..2658904 (25 bp)
TGTTTGCTCTATTCTTTGCTTTTAG
LOC_Os02g05490
Target Sequence 
TGTGCTGCATGCATTGCTTGCTAGTTTTATTTGAAGATTATATGTAAAGCTGTAGTGATCTCCTTTGGTGAGCTACTGTA
CANGTAGTATGTCTATACTCCATAGCAAGCTACACAAAGAAAGTAGTCCGCGCTAATGTTGTTGATTCTTTTGGATACGT
TACAAGGATACTCGTATTGGCAGCTGCGAATCAACTTCAGGTTGTCTTCGAGATGCATTTGTCCTGCCTCAGCTGGAATA
GAGAACTGAAGAAAGCAGCAGCAGCAGCGGCAAAGATCCCCTCTGTAAATACTCTCATTTTTGTTTGCTCTATTCTTTGC
TTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis