Browse Element(s) Details


OsAffx.2515.1.S1_at

Description tigr:9630.m00466
TID=OsAffx.2515.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0546011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05420OsAffx.25889.1.S1_at10/112+2607097..2611379expressed protein
LOC_Os02g05430Os.11895.1.S1_at11/112+2611618..2614085expressed protein
LOC_Os02g05430Os.11895.1.S2_at11/112+2611618..2614085expressed protein
LOC_Os02g05430OsAffx.2512.1.S1_x_at1/112+2611618..2614085expressed protein
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os02g05490Os.26369.1.S1_at11/112+2656063..2659126expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2515.1.S1_at--384--3871Chr02:2632043..2632067 (25 bp)
CTGATCTGCCCGACCAATGAGGAGG
LOC_Os02g05460
OsAffx.2515.1.S1_at--824--8171Chr02:2631993..2632017 (25 bp)
GGAAGCTTCCTTGTCTTGGAGAGCC
LOC_Os02g05460
OsAffx.2515.1.S1_at--328--1371Chr02:2631974..2631998 (25 bp)
AGAGCCCGAAGAGGCGACAGGCGAT
LOC_Os02g05460
OsAffx.2515.1.S1_at--1038--3931Chr02:2631947..2631971 (25 bp)
CGGCGGCTAGAGTTGAAGGCGGGTT
LOC_Os02g05460
OsAffx.2515.1.S1_at--577--8471Chr02:2631880..2631904 (25 bp)
TGGCGTTGGTACTGAGCTGCCACCA
LOC_Os02g05460
OsAffx.2515.1.S1_at--1002--1791Chr02:2631856..2631880 (25 bp)
ACCGCCTGAGGCTAGATCCAATGAG
LOC_Os02g05460
OsAffx.2515.1.S1_at--895--571Chr02:2631841..2631865 (25 bp)
ATCCAATGAGCCCTAGGACGGTTTG
LOC_Os02g05460
OsAffx.2515.1.S1_at--811--3691Chr02:2631829..2631853 (25 bp)
CTAGGACGGTTTGGGCGAGCTCGGT
LOC_Os02g05460
OsAffx.2515.1.S1_at--671--9431Chr02:2631809..2631833 (25 bp)
TCGGTGGCGCCGTTGTCCGCGTCTT
LOC_Os02g05460
OsAffx.2515.1.S1_at--1042--4911Chr02:2631776..2631800 (25 bp)
GCTTCCGGCCCCAATGAAGAGGCGG
LOC_Os02g05460
OsAffx.2515.1.S1_at--242--4511Chr02:2631769..2631793 (25 bp)
GCCCCAATGAAGAGGCGGTGATGCC
LOC_Os02g05460
Target Sequence 
CTGATCTGCCCGACCAATGAGGAGGGGACAGTGGTGGCACCTGAGATCGGGGAAGCTTCCTTGTCTTGGAGAGCCCGAAG
AGGCGACAGGCGATGGCGGCGGCTAGAGTTGAAGGCGGGTTGGAGGGAGGGTGGAACTAGTGCGAGGAGGGAGAAGGGTG
AGGTGGCGTTGGTACTGAGCTGCCACCACCGCCTGAGGCTAGATCCAATGAGCCCTAGGACGGTTTGGGCGAGCTCGGTG
GCGCCGTTGTCCGCGTCTTCTTCCGCGGCTTCCGGCCCCAATGAAGAGGCGGTGATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis