Browse Element(s) Details


OsAffx.25889.1.S1_at

Description tigr:9630.m00461
TID=OsAffx.25889.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0542010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05370Os.19983.1.S1_x_at7/112+2582087..2586130expressed protein
LOC_Os02g05390Os.45173.1.S1_x_at5/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.46610.1.S1_x_at3/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390OsAffx.20877.1.S1_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.38764.1.S1_x_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05400Os.26890.1.A1_x_at4/112+2593931..2598268phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os02g05410NANA2+2600398..2603981Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05420OsAffx.25889.1.S1_at10/112+2607097..2611379expressed protein
LOC_Os02g05430Os.11895.1.S1_at11/112+2611618..2614085expressed protein
LOC_Os02g05430Os.11895.1.S2_at11/112+2611618..2614085expressed protein
LOC_Os02g05430OsAffx.2512.1.S1_x_at1/112+2611618..2614085expressed protein
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25889.1.S1_at--480--7612Chr02:2608585..2608609 (25 bp)
GGGAATGGTGGCTCTACGTCAGCAC
LOC_Os02g05420
OsAffx.25889.1.S1_at--244--7732Chr02:2608591..2608613 (23 bp)
GGTGGCTCTACGTCAGCACAAGGGA
LOC_Os02g05420
OsAffx.25889.1.S1_at--1145--9652Chr02:2608603..2608856 (25 bp)
TCAGCACAAGGGACAACGTACAGTT
LOC_Os02g05420
OsAffx.25889.1.S1_at--54--10772Chr02:2608855..2608879 (25 bp)
TTGATGTTCGGTTCACACTCAACAG
LOC_Os02g05420
OsAffx.25889.1.S1_at--1146--2172Chr02:2608869..2608893 (25 bp)
ACACTCAACAGTCCTGTTCCTGTTT
LOC_Os02g05420
OsAffx.25889.1.S1_at--1125--8792Chr02:2608883..2608907 (25 bp)
TGTTCCTGTTTTCTTTGACAAGGAC
LOC_Os02g05420
OsAffx.25889.1.S1_at--520--3211NONE
CAAGGACAAAGTCAGGCAGTCGCCG
NONE
OsAffx.25889.1.S1_at--474--5092Chr02:2610959..2610983 (25 bp)
GCACCTGTGGCGAAAACAAGACCAA
LOC_Os02g05420
OsAffx.25889.1.S1_at--951--8232Chr02:2610987..2611011 (25 bp)
GGCAAAGATTGTCGCATCAAATGCA
LOC_Os02g05420
OsAffx.25889.1.S1_at--1062--9832Chr02:2611016..2611040 (25 bp)
TAGAGACTTTTTCTCCCTTCGTTCT
LOC_Os02g05420
OsAffx.25889.1.S1_at--559--10312Chr02:2611025..2611047 (23 bp)
TTTCTCCCTTCGTTCTAACATGGAT
LOC_Os02g05420
Target Sequence 
GGGAATGGTGGCTCTACGTCAGCACAAGGGACAACGTACAGTTGATGTTCGGTTCACACTCAACAGTCCTGTTCCTGTTT
TCTTTGACAAGGACAAAGTCAGGCAGTCGCCGGCGAGCAGGATGCCGCACGGCCGCAGCGGCAGCGCGCAGCCGCCGGCT
GCCTCGGGCCTCNGCGNGGAACGGCGGACGCCGACCTGCAGGCTGCAGCTGTGCAGCGCCTGCTCCTGCTCGGCTGACGG
CCTGGAGCAGCCTCCTGCCTGGCTGCCTCCTGGGCCCCTGCAGGCTGCCGCGCCGGCTGCCGCACGCGGCACGCCGTCGC
CCGTCGGTCACGGTTTGGGTGGCCAAGGCGCCAGGCGGGTGGGGAATTGGGGGAAAATTGCAAATGGGCTGANATGTGGC
CCAATTAGACCACAGNNTGNNNNGNNANANNNNNNNGANTNNNANNNTNNGCACCTGTGGCGAAAACAAGACCAAAGAGG
CAAAGATTGTCGCATCAAATGCAAATTTAGAGACTTTTTCTCCCTTCGTTCTAACATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis