Browse Element(s) Details


Os.11895.1.S2_at

Description gb:AK100310.1
DB_XREF= gi:32985519
TID=Os.11895.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078J22, full insert sequence.
FL= gb:AK100310.1 gb:AK103956.1 gb:AK100775.1 gb:AK073597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0543011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05390Os.45173.1.S1_x_at5/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.46610.1.S1_x_at3/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390OsAffx.20877.1.S1_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.38764.1.S1_x_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05400Os.26890.1.A1_x_at4/112+2593931..2598268phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os02g05410NANA2+2600398..2603981Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05420OsAffx.25889.1.S1_at10/112+2607097..2611379expressed protein
LOC_Os02g05430Os.11895.1.S1_at11/112+2611618..2614085expressed protein
LOC_Os02g05430Os.11895.1.S2_at11/112+2611618..2614085expressed protein
LOC_Os02g05430OsAffx.2512.1.S1_x_at1/112+2611618..2614085expressed protein
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11895.1.S2_at--966--3312Chr02:2612149..2612173 (25 bp)
CACTATGGATCTTAGCAAGGCTCTT
LOC_Os02g05430
Os.11895.1.S2_at--1023--10552Chr02:2612107..2612131 (25 bp)
TTCTTTTGCTCCATTGTAACTTACA
LOC_Os02g05430
Os.11895.1.S2_at--77--2832Chr02:2612083..2612107 (25 bp)
AAGTTTAGCTGTGCATCCTACTCTA
LOC_Os02g05430
Os.11895.1.S2_at--1112--7312Chr02:2612073..2612097 (25 bp)
GTGCATCCTACTCTAATATACTTTT
LOC_Os02g05430
Os.11895.1.S2_at--206--4292Chr02:2612013..2612037 (25 bp)
CCTCTGCATAATTCTTTCCTCATAA
LOC_Os02g05430
Os.11895.1.S2_at--47--6373Chr10:2999928..2999947 (20 bp)
GATCCAAGTACAACATGCCAATATT
NONE
Os.11895.1.S2_at--1046--3112Chr02:2611951..2611975 (25 bp)
AATATTGCCTGGTACTATCTCCTGT
LOC_Os02g05430
Os.11895.1.S2_at--400--7393Chr02:2446332..2446352 (21 bp)
GTGAGTCTATAATGATTCCTTGTCT
NONE
Os.11895.1.S2_at--555--572Chr02:2611712..2611736 (25 bp)
ATCCTTTTCAATTGGTCATTTCGTG
LOC_Os02g05430
Os.11895.1.S2_at--117--3592Chr02:2611696..2611720 (25 bp)
CATTTCGTGATGTTGGACTGTGATA
LOC_Os02g05430
Os.11895.1.S2_at--11--8152Chr02:2611670..2611694 (25 bp)
GGACACCGTGTATAACTGAAACTAT
LOC_Os02g05430
Target Sequence 
CACTATGGATCTTAGCAAGGCTCTTTGAAGGTGGGGTTTGTTTTCTTTTGCTCCATTGTAACTTACAAGTTTAGCTGTGC
ATCCTACTCTAATATACTTTTCAATGAGTATATCACATGCATTATTTCAATGAATGCCTCTGCATAATTCTTTCCTCATA
ATTCAGTTACATTGCGTTAGATCCAAGTACAACATGCCAATATTGCCTGGTACTATCTCCTGTGAGTCTATAATGATTCC
TTGTCTTNNCATCTCCATCTCAAGTCCTCANTTTATNGNTGAAGTCACAAAACATTGTTAGNAATAAGGTNAANNNNNNN
TNTATATTTTTTTGAGGAGAGGTTAAATTTTTATATTAAGTATGCATATCAATATGACGTTTCAGTTCATGTTTGAACCT
ATTGGTGTCAGCATGGTATTGTAATTAGATACTACATATCCTTTTCAATTGGTCATTTCGTGATGTTGGACTGTGATATG
GACACCGTGTATAACTGAAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11895.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis