Browse Element(s) Details


OsAffx.2514.1.S1_s_at

Description tigr:9630.m00449
TID=OsAffx.2514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=splicing factor 3b subunit 1 (spliceosome associated protein 155) (sap155) (sf3b155) (pre-mrna splicing factor sf3b 155 kda subunit)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0531011/11Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g049507/11Splicing factor 3B subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05250NANA2+2521222..2522480expressed protein
LOC_Os02g05260OsAffx.20369.1.S1_at7/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05260Os.15499.1.S1_x_at1/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05270OsAffx.11899.1.S1_at11/112+2535305..2536173hypothetical protein
LOC_Os02g05280OsAffx.11900.1.S1_at11/112+2538168..2538668hypothetical protein
LOC_Os02g05290NANA2+2539904..2540692hypothetical protein
LOC_Os02g05300OsAffx.11902.1.S1_at11/112+2542088..2543950hypothetical protein
LOC_Os02g05310Os.50814.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.50814.2.S1_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310OsAffx.2514.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.35337.1.S1_at5/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05320Os.26890.1.A1_x_at10/112+2551634..2556276phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g05330Os.458.1.S1_at11/112+2557639..2561011Eukaryotic initiation factor 4A, putative, expressed
LOC_Os02g05340Os.14890.1.S1_at11/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05340Os.14890.1.S2_at10/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05350OsAffx.2512.1.S1_x_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05350Os.11895.1.S1_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05360Os.11895.1.S1_at11/112+2575659..2577062expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2514.1.S1_s_at--331--8132Chr02:2550276..2550300 (25 bp)
GGACTAGGTTGCACCAACAGCTATT
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--286--3391Chr02:2550293..2550317 (25 bp)
CAGCTATTTTGTTCGGTTTGCTCCT
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--511--6852Chr02:2550308..2550332 (25 bp)
GTTTGCTCCTTTTCAGTGGTGCCAA
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--124--3471Chr02:2550321..2550345 (25 bp)
CAGTGGTGCCAAAGCCTTGGTTATT
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--479--3571Chr02:2550351..2550375 (25 bp)
CATATGACCCATAGTGTGCAGGCAC
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--445--7473Chr02:2550364..2550388 (25 bp)
GTGTGCAGGCACTAGTTCGTTTTTC
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--551--5112Chr02:2550372..2550396 (25 bp)
GCACTAGTTCGTTTTTCCTTTCATG
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--686--10673Chr02:2550386..2550410 (25 bp)
TTCCTTTCATGTTTCTTTCTGCAAA
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--786--2253Chr02:2550408..2550432 (25 bp)
AAATTTGCTTTATGTTCTGCCTTTT
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--443--4313Chr02:2550427..2550451 (25 bp)
CCTTTTTCTTCCCTCTATGCAAAGA
LOC_Os02g05310
OsAffx.2514.1.S1_s_at--593--2593Chr02:2550468..2550492 (25 bp)
AACGCATTGGCAGGCAGGATGTACA
LOC_Os02g05310
Target Sequence 
GGACTAGGTTGCACCAACAGCTATTTTGTTCGGTTTGCTCCTTTTCAGTGGTGCCAAAGCCTTGGTTATTGTTATCATAT
GACCCATAGTGTGCAGGCACTAGTTCGTTTTTCCTTTCATGTTTCTTTCTGCAAATTTGCTTTATGTTCTGCCTTTTTCT
TCCCTCTATGCAAAGAACACATCTGATGTGAGAACGCATTGGCAGGCAGGATGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2514.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis