Browse Element(s) Details


Os.35400.1.S1_at

Description gb:AK067648.1
DB_XREF= gi:32977666
TID=Os.35400.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0014K08.8 (OSJNBa0014K08.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112P22, full insert sequence.
FL= gb:AK067648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5411911/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54119Os.35400.1.S1_at11/111+31447556..31459579retrotransposon protein, putative, unclassified, expressed
LOC_Os01g54140OsAffx.21632.1.S1_at11/111+31461100..31463986hypothetical protein
LOC_Os01g54150OsAffx.22461.2.S1_x_at11/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54150OsAffx.22461.3.S1_x_at3/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54160NANA1+31471880..31477780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35400.1.S1_at--211--3271Chr01:31448265..31448289 (25 bp)
CAACTAGATTTTTGTGGCGTCACCC
LOC_Os01g54119
Os.35400.1.S1_at--775--6091Chr01:31448232..31448256 (25 bp)
GAGTCAGCCTTCTATTCTATCTGGT
LOC_Os01g54119
Os.35400.1.S1_at--64--10791Chr01:31448100..31448124 (25 bp)
TTGATGTACTTGATGCACCGCCTGC
LOC_Os01g54119
Os.35400.1.S1_at--1010--10391Chr01:31447885..31447909 (25 bp)
TTTTGCATCCAGAGAAGGTCCGACA
LOC_Os01g54119
Os.35400.1.S1_at--1070--4391Chr01:31447845..31447869 (25 bp)
GCCAACTCAGATTTGCCATAGCCTT
LOC_Os01g54119
Os.35400.1.S1_at--769--9891Chr01:31447815..31447839 (25 bp)
TACTCCTCTTTCTGTCTGATTCAAG
LOC_Os01g54119
Os.35400.1.S1_at--474--8831Chr01:31447799..31447823 (25 bp)
TGATTCAAGCATTGCTTCCTGGCGC
LOC_Os01g54119
Os.35400.1.S1_at--927--10291Chr01:31447681..31447705 (25 bp)
TTTCCTCCCCTTTTGTAAAGTCATG
LOC_Os01g54119
Os.35400.1.S1_at--878--8791Chr01:31447658..31447682 (25 bp)
TGTTCTTTGCTTCCATGGGCTACAA
LOC_Os01g54119
Os.35400.1.S1_at--269--9851Chr01:31447638..31447662 (25 bp)
TACAATCCATTCTTTCACACTTCAG
LOC_Os01g54119
Os.35400.1.S1_at--810--6471Chr01:31447575..31447599 (25 bp)
GATAGCTTGACCCAATATACCATGC
LOC_Os01g54119
Target Sequence 
CAACTAGATTTTTGTGGCGTCACCCCGTTGCTCGAGTCAGCCTTCTATTCTATCTGGTGTTTGTGCACTTATTCTTGATG
TACTTGATGCACCGCCTGCAGGATTTTGCATCCAGAGAAGGTCCGACAGCCATGGGGGGGTTGGCCAACTCAGATTTGCC
ATAGCCTTTGGGGTACTCCTCTTTCTGTCTGATTCAAGCATTGCTTCCTGGCGCTCGCTCTAGACGCTCAAGGTGCCCCC
CCCCCCCCCCCCTTGGTTTGATGCAGTATTAACCCCCCACAGTTTTTTTTTTTTTTGCCTTCATTGTTTCCTCCCCTTTT
GTAAAGTCATGTTCTTTGCTTCCATGGGCTACAATCCATTCTTTCACACTTCAGGAGTTCATTATATTGATCACAGAATG
TACAACACTATGGATAGCTTGACCCAATATACCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis