Browse Element(s) Details


Os.35409.1.A1_s_at

Description gb:AK066177.1
DB_XREF= gi:32976195
TID=Os.35409.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013054L24, full insert sequence.
FL= gb:AK066177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1953011/11ATP-binding region, ATPase-like domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19480NANA12+11324158..11330239retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19490NANA12+11331755..11333193retrotransposon protein, putative, unclassified
LOC_Os12g19510OsAffx.7642.1.S1_at9/1112+11335451..11337728hypothetical protein
LOC_Os12g19519NANA12+11340954..11341806NA
LOC_Os12g19530Os.35409.1.A1_s_at11/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19530Os.17276.1.S1_at10/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19530Os.35409.1.A1_a_at9/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19549Os.50254.1.S1_at11/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19549Os.50254.2.S1_x_at10/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19549Os.33742.1.S1_at1/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35409.1.A1_s_at--64--7931Chr12:11353962..11353986 (25 bp)
GGATTAACAGTTGCCCGTGAGATAC
LOC_Os12g19530
Os.35409.1.A1_s_at--591--1272Chr12:11353981..11354005 (25 bp)
AGATACTTGAGAACTATGGCTGTGT
LOC_Os12g19530
Os.35409.1.A1_s_at--279--6811Chr12:11354004..11354028 (25 bp)
GTTTTGCGTGTGATATCGCCTCGGA
LOC_Os12g19530
Os.35409.1.A1_s_at--434--9331Chr12:11354019..11354043 (25 bp)
TCGCCTCGGAGACCTGATGCAATTA
LOC_Os12g19530
Os.35409.1.A1_s_at--325--10111Chr12:11354071..11354095 (25 bp)
TATGGTTGCCAACTTCACAGACAGA
LOC_Os12g19530
Os.35409.1.A1_s_at--335--1271Chr12:11354277..11354301 (25 bp)
AGATCATACCACCTTTTCTGTTTTG
LOC_Os12g19530
Os.35409.1.A1_s_at--451--8151Chr12:11354301..11354325 (25 bp)
GGAAATGTTCGAACGACGGCTGCAA
LOC_Os12g19530
Os.35409.1.A1_s_at--847--7351Chr12:11354360..11354384 (25 bp)
GTGAAGCACCATATGAACATCTTTA
LOC_Os12g19530
Os.35409.1.A1_s_at--577--9851Chr12:11354383..11354407 (25 bp)
TACACGCATTCCAGTAAAGCATGTT
LOC_Os12g19530
Os.35409.1.A1_s_at--260--2351Chr12:11354418..11354442 (25 bp)
AAAGCACCATATGAACACCTTTGGA
LOC_Os12g19530
Os.35409.1.A1_s_at--544--3371Chr12:11354433..11354457 (25 bp)
CACCTTTGGACGTTTTTGTAGCATA
LOC_Os12g19530
Target Sequence 
GGATTAACAGTTGCCCGTGAGATACTTGAGAACTATGGCTGTGTTTTGCGTGTGATATCGCCTCGGAGACCTGATGCAAT
TATAGGGACTGGAGGTAGTCGTATTGAGATATGGTTGCCAACTTCACAGACAGAACTATNTGAGATCACTGAAGGAGCTT
AGCTGAATTTTAGTAATCAACGCATGTTTAGAAGATAAAGGTCATGTTTAATTGGCATGATGGAGATCATACCACCTTTT
CTGTTTTGGAAATGTTCGAACGACGGCTGCAAAGTGAGCTTATACTTCTGATTAGATCAGTCATCAGTGAAGCACCATAT
GAACATCTTTACACGCATTCCAGTAAAGCATGTTACCTGTGGAAAAAGCACCATATGAACACCTTTGGACGTTTTTGTAG
CATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35409.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis