Browse Element(s) Details


OsAffx.7642.1.S1_at

Description tigr:9640.m01930
TID=OsAffx.7642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g195109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19470Os.10959.1.S2_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.10959.1.S1_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.40291.1.A1_x_at1/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19480NANA12+11324158..11330239retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19490NANA12+11331755..11333193retrotransposon protein, putative, unclassified
LOC_Os12g19510OsAffx.7642.1.S1_at9/1112+11335451..11337728hypothetical protein
LOC_Os12g19519NANA12+11340954..11341806NA
LOC_Os12g19530Os.35409.1.A1_s_at11/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19530Os.17276.1.S1_at10/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19530Os.35409.1.A1_a_at9/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19549Os.50254.1.S1_at11/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19549Os.50254.2.S1_x_at10/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19549Os.33742.1.S1_at1/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7642.1.S1_at--741--1811Chr12:11336133..11336157 (25 bp)
ACTCCGGCTAACCAATTAGTTCCTG
LOC_Os12g19510
OsAffx.7642.1.S1_at--781--5971Chr12:11336181..11336205 (25 bp)
GTAAACGCTGTGTGGGCGCAACCCA
LOC_Os12g19510
OsAffx.7642.1.S1_at--245--1771Chr12:11336319..11336343 (25 bp)
ACCGTGCCACATGACAAGGACCAAG
LOC_Os12g19510
OsAffx.7642.1.S1_at--603--2831Chr12:11336441..11336465 (25 bp)
AAGTATGTGGGCACTCTGTACACCA
LOC_Os12g19510
OsAffx.7642.1.S1_at--495--9811Chr12:11336484..11336508 (25 bp)
TAAACAAGTACAAGACACCCACCGC
LOC_Os12g19510
OsAffx.7642.1.S1_at--780--5051Chr12:11336621..11336645 (25 bp)
GCAGCAGAGTCGGTTGGTTCCTCAC
LOC_Os12g19510
OsAffx.7642.1.S1_at--243--10671NONE
TTCCTCACCCGCCAAGAGAGAATGG
NONE
OsAffx.7642.1.S1_at--445--7891Chr12:11337236..11337260 (25 bp)
GGTTCGGCTGAACCCATCGTGGCTC
LOC_Os12g19510
OsAffx.7642.1.S1_at--299--8331Chr12:11337256..11337280 (25 bp)
GGCTCCAATCTCTCTTAATTTTGTC
LOC_Os12g19510
OsAffx.7642.1.S1_at--515--10811NONE
TTGTCAGGTGTACAGATGTCTCTCA
NONE
OsAffx.7642.1.S1_at--687--6271Chr12:11337672..11337696 (25 bp)
GATGTCTCTCATACTTTCATGATCA
LOC_Os12g19510
Target Sequence 
ACTCCGGCTAACCAATTAGTTCCTGTCAAAAACTACACAATGGAGGGGGTAAACGCTGTGTGGGCGCAACCCATCATCTT
CGTGCCAAGCTCCTCGGCCGATTTGGGGCCGGTCGGCGAACTCCCTGGTTTGGCCGAATCCTTCCCGGCCCCGTTCGGCT
ACGCGTTCGGCAGCACGATCTCTCTCACCGTGCCACATGACAAGGACCAAGGTGTGGGTGATTCACCAAAGTATGTGGGC
ACTCTGTACACCAAGGCAGGAGATGAGGTGCTAAACAAGTACAAGACACCCACCGCCACTCCATCAACCCCTAAGGGGGA
GAGGTTTTGCATTATGGGAGTGAGAACCCCTAGCGGTGGGTACGGCAAGGGCTTGTGCCGCCCCTTGACGCCCATGGAAA
AGGACGAGGCAGCAGAGTCGGTTGGTTCCTCACCCGCCAAGAGAGAATGGGCGTCAGAGGGGTTTGGCCGAACCCCTGGT
TCGGCTGAACCCATCGTGGCTCCAATCTCTCTTAATTTTGTCAGGTGTACAGATGTCTCTCATACTTTCATGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis