Browse Element(s) Details


Os.50254.1.S1_at

Description gb:AF288216.1
DB_XREF= gi:13625301
GEN=TERT
TID=Os.50254.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50254 (NCBI UniGene Cluster)
DEF=Oryza sativa telomerase reverse transcriptase (TERT) mRNA, complete cds.
PROD=telomerase reverse transcriptase
FL= gb:AF288216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1954911/11Telomerase reverse transcriptase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19510OsAffx.7642.1.S1_at9/1112+11335451..11337728hypothetical protein
LOC_Os12g19519NANA12+11340954..11341806NA
LOC_Os12g19530Os.35409.1.A1_s_at11/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19530Os.17276.1.S1_at10/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19530Os.35409.1.A1_a_at9/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19549Os.50254.1.S1_at11/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19549Os.50254.2.S1_x_at10/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19549Os.33742.1.S1_at1/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19570NANA12+11389294..11390320retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007004biological_processtelomerase-dependent telomere maintenance
GO:0003720molecular_functiontelomerase activity
GO:0003721molecular_functiontelomeric template RNA reverse transcriptase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50254.1.S1_at--116--5291Chr12:11360455..11360479 (25 bp)
GAATGTGATACCTTGCGCTATGCTG
LOC_Os12g19549
Os.50254.1.S1_at--678--6571Chr12:11360425..11360449 (25 bp)
GATTCTCACTCGTCTATGTTCTGGA
LOC_Os12g19549
Os.50254.1.S1_at--988--1451Chr12:11360381..11360405 (25 bp)
AGAAGTTGCTTTCCTGGTGTACTGC
LOC_Os12g19549
Os.50254.1.S1_at--530--10391Chr12:11360317..11360341 (25 bp)
TTTTGGGACTTTACCTCCAATCTGC
LOC_Os12g19549
Os.50254.1.S1_at--865--4271Chr12:11360260..11360284 (25 bp)
CCTCGCTAAAACATACTCCTGGTGT
LOC_Os12g19549
Os.50254.1.S1_at--625--7731Chr12:11360221..11360245 (25 bp)
GGTGGATTCATGTCCTAACCTCATT
LOC_Os12g19549
Os.50254.1.S1_at--635--131Chr12:11360199..11360223 (25 bp)
ATTCAAGGTGCGACTGTTGGCCCGT
LOC_Os12g19549
Os.50254.1.S1_at--1024--4531Chr12:11360180..11360204 (25 bp)
GCCCGTGTTCTCCAATCTAGTGTAA
LOC_Os12g19549
Os.50254.1.S1_at--402--5971Chr12:11360150..11360174 (25 bp)
GAGAACGAGCACCTCACTAGTCAAA
LOC_Os12g19549
Os.50254.1.S1_at--1--5731Chr12:11360062..11360086 (25 bp)
GACTGATTGCTCATTTCTTTAGGAT
LOC_Os12g19549
Os.50254.1.S1_at--225--7951Chr12:11360041..11360065 (25 bp)
GGATACCTGGTAGCACTCGAGCAGT
LOC_Os12g19549
Target Sequence 
GAATGTGATACCTTGCGCTATGCTGTGGATGATTCTCACTCGTCTATGTTCTGGAAATTTAAGTTCTAGAAACTAGAAGT
TGCTTTCCTGGTGTACTGCAGAAACTACTGTTCTTTTGGATATTCTTTTGACAAGTCATTTTGGGACTTTACCTCCAATC
TGCCGACGTGTCATCGCACGCAGTACCAATGCCTACCTCGCTAAAACATACTCCTGGTGTGTGCAAAACAAACCGGTGGA
TTCATGTCCTAACCTCATTCAAGGTGCGACTGTTGGCCCGTGTTCTCCAATCTAGTGTAACGAACGAGAACGAGCACCTC
ACTAGTCAAAGGTTAATGGTCTCCTGAGGTGACAGTGGGGTGCCGATCATGGTTTTTTTTTAAAGCATTTTACGACTGAT
TGCTCATTTCTTTAGGATACCTGGTAGCACTCGAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis