Browse Element(s) Details


Os.35456.1.S1_at

Description gb:AK067453.1
DB_XREF= gi:32977471
TID=Os.35456.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106H06, full insert sequence.
FL= gb:AK067453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3845011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38410NANA6+22754312..22757233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38420Os.10703.2.S1_x_at1/116+22757549..22763659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38430Os.51681.1.S1_x_at11/116+22765884..22766567expressed protein
LOC_Os06g38430Os.51681.1.S1_at11/116+22765884..22766567expressed protein
LOC_Os06g38430Os.51797.1.S1_x_at1/116+22765884..22766567expressed protein
LOC_Os06g38440OsAffx.5045.1.S1_at11/116+22776169..22777114hypothetical protein
LOC_Os06g38450Os.35456.1.S1_at11/116+22778412..22780112Papain family cysteine protease containing protein, expressed
LOC_Os06g38460OsAffx.15821.2.S1_at11/116+22790491..22790871hypothetical protein
LOC_Os06g38470Os.10708.2.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_a_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.28463.1.S1_x_at1/116+22793362..22799199histone deacetylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35456.1.S1_at--739--9231Chr06:22779553..22779577 (25 bp)
TCCATCAGAGGCTTCCAGTATGTCC
LOC_Os06g38450
Os.35456.1.S1_at--120--3451Chr06:22779568..22779592 (25 bp)
CAGTATGTCCCTCCGAACAACGAGA
LOC_Os06g38450
Os.35456.1.S1_at--27--5171Chr06:22779650..22779674 (25 bp)
GCAAGGTGTCCCAGTTCTTCAGCAG
LOC_Os06g38450
Os.35456.1.S1_at--225--9571Chr06:22779665..22779689 (25 bp)
TCTTCAGCAGCGGAGTGTTTGGCGC
LOC_Os06g38450
Os.35456.1.S1_at--308--2291Chr06:22779696..22779720 (25 bp)
AAATGAGACGTGCACCACTGACCTC
LOC_Os06g38450
Os.35456.1.S1_at--849--231Chr06:22779819..22779843 (25 bp)
ATATATGAAGATCGCGCGGGATGTC
LOC_Os06g38450
Os.35456.1.S1_at--427--5591Chr06:22779912..22779936 (25 bp)
GACATAAATTGAGCCGATAACCGTG
LOC_Os06g38450
Os.35456.1.S1_at--338--6471Chr06:22779927..22779951 (25 bp)
GATAACCGTGTTAGCGTCTGGTGAA
LOC_Os06g38450
Os.35456.1.S1_at--977--10051Chr06:22779956..22779980 (25 bp)
TAGTACGGCGTGGTGTAATATGCGA
LOC_Os06g38450
Os.35456.1.S1_at--965--6791Chr06:22780009..22780033 (25 bp)
GTTATATTTTACTATGCCGTTTTCA
LOC_Os06g38450
Os.35456.1.S1_at--1072--4471Chr06:22780024..22780048 (25 bp)
GCCGTTTTCATGACAGTATTACTTT
LOC_Os06g38450
Target Sequence 
TCCATCAGAGGCTTCCAGTATGTCCCTCCGAACAACGAGACCGCCCTCCTGCTGGCCGTCGCCCACCAGCCTGTGTCCGT
GGCACTCGACGGCGTGGGCAAGGTGTCCCAGTTCTTCAGCAGCGGAGTGTTTGGCGCGATGCAAAATGAGACGTGCACCA
CTGACCTCAACCATGCCATGACGGCGGTGGGGTACGGCACCGACGAGCACGGCACCAAGTACTGGCTAATGAAGAACTCG
TGGGGAACCGACTGGGGCGAGGGAGGATATATGAAGATCGCGCGGGATGTCGCGTCCAACACCGGCCTTTGCGGCCTCGC
CATGCAACCCTCTTACCCCGTTGCCTAATAAACTAAAGAGACATAAATTGAGCCGATAACCGTGTTAGCGTCTGGTGAAA
AAGTAGTACGGCGTGGTGTAATATGCGATTCATGTGATAAATTATTATCAGTGTTTGTTATATTTTACTATGCCGTTTTC
ATGACAGTATTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis