Browse Element(s) Details


Os.35458.1.S1_at

Description gb:AK067443.1
DB_XREF= gi:32977461
TID=Os.35458.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102L13, full insert sequence.
FL= gb:AK067443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4141011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41370NANA6+24795550..24798356hypothetical protein
LOC_Os06g41380Os.57073.1.S1_at11/116+24804549..24807592expressed protein
LOC_Os06g41390Os.5942.1.S1_at11/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41390Os.49688.1.S1_at9/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41410Os.35458.1.S1_at11/116+24818856..24829136expressed protein
LOC_Os06g41410OsAffx.15876.1.A1_at9/116+24818856..24829136expressed protein
LOC_Os06g41410Os.36709.1.S1_x_at3/116+24818856..24829136expressed protein
LOC_Os06g41410Os.8753.4.S1_x_at1/116+24818856..24829136expressed protein
LOC_Os06g41410Os.6763.1.S1_x_at1/116+24818856..24829136expressed protein
LOC_Os06g41410OsAffx.5273.1.S1_at1/116+24818856..24829136expressed protein
LOC_Os06g41440Os.5275.1.S1_at10/116+24830707..24838945legume lectins beta domain PF|00139 containing protein, putative, expressed
LOC_Os06g41450Os.27788.1.S1_at11/116+24842687..24843763VQ motif family protein, expressed
LOC_Os06g41460Os.10827.1.S1_x_at11/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41460Os.46055.2.S1_x_at6/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35458.1.S1_at--158--7391Chr06:24822267..24822291 (25 bp)
GTGATGACCGGGACCATCCTCGGCG
LOC_Os06g41410
Os.35458.1.S1_at--323--4591Chr06:24822480..24822504 (25 bp)
GCGCACATGAGCATGGTCGCCAAGG
LOC_Os06g41410
Os.35458.1.S1_at--162--4491Chr06:24822575..24822598 (24 bp)
GCCGGACTCATGACCTTCATTTAGA
LOC_Os06g41410
Os.35458.1.S1_at--637--6091Chr06:24828818..24828842 (25 bp)
GAGTAATACCTAGCGGCTCAGAGCA
LOC_Os06g41410
Os.35458.1.S1_at--982--7231Chr06:24828843..24828867 (25 bp)
GTCCCAGATCCTTTCTTCAGAAGTA
LOC_Os06g41410
Os.35458.1.S1_at--267--351Chr06:24828876..24828900 (25 bp)
ATAACAACCAGCATGTACTTGAGAA
LOC_Os06g41410
Os.35458.1.S1_at--930--331Chr06:24828901..24828925 (25 bp)
ATAACAATCCGGCATTCCTGGCATT
LOC_Os06g41410
Os.35458.1.S1_at--1038--9271Chr06:24828916..24828940 (25 bp)
TCCTGGCATTATTTGAACGCGGCAA
LOC_Os06g41410
Os.35458.1.S1_at--781--5411Chr06:24828930..24828954 (25 bp)
GAACGCGGCAAGTGTTTTGTTTGAA
LOC_Os06g41410
Os.35458.1.S1_at--598--10131Chr06:24829066..24829090 (25 bp)
TATGCTTAAGTGTCTGTTACCCTGC
LOC_Os06g41410
Os.35458.1.S1_at--1120--8751Chr06:24829080..24829104 (25 bp)
TGTTACCCTGCGACTAACCGTAAAT
LOC_Os06g41410
Target Sequence 
GTGATGACCGGGACCATCCTCGGCGGCGCGCTCGGCTTCTACGTCATGCACCGCCTCGAGACCTCCCACAAGGCGAAGAT
GGAGGAGAGGCTGCGCAAGTACGAGGCGCACATGAGCATGGTCGCCAAGGGGAAGGAGGAGGCGCAGCAGCGGCTGCAGG
ACGAGGCGGCGCTGCAGCACAAGGACCAGGCCCGGCTCTTGCCGGACTCATGACCTTCATTTAGAGTAATACCTAGCGGC
TCAGAGCAGTCCCAGATCCTTTCTTCAGAAGTAGATGAGAAATAACAACCAGCATGTACTTGAGAAATAACAATCCGGCA
TTCCTGGCATTATTTGAACGCGGCAAGTGTTTTGTTTGAAGAATGTGAAAAGAAAAAAAAAGCTCCTTTTTTAGTCTTAT
TGTAACTGTAACAGCAAGTTGTAGGTTCAGATGAACATCTATAAGAAGGTGGGAAGTGACATTTGTAACTGTATGCTTAA
GTGTCTGTTACCCTGCGACTAACCGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis