Browse Element(s) Details


Os.35465.1.S1_at

Description gb:AK067396.1
DB_XREF= gi:32977414
TID=Os.35465.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0560B06.26 (P0560B06.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106C18, full insert sequence.
FL= gb:AK067396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2712011/11expressed protein
LOC_Os01g269048/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27060Os.45908.1.S1_at7/111+15420877..15423270hypothetical protein
LOC_Os01g27060OsAffx.6700.1.S1_at1/111+15420877..15423270hypothetical protein
LOC_Os01g27070OsAffx.11219.1.S1_at11/111+15426766..15427323hypothetical protein
LOC_Os01g27080Os.47463.1.S1_x_at6/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27080Os.14491.2.S1_x_at5/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27090NANA1+15434210..15437514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27100OsAffx.11220.1.S1_at11/111+15438398..15438937hypothetical protein
LOC_Os01g27110OsAffx.23412.2.S1_at11/111+15443287..15443784hypothetical protein
LOC_Os01g27110OsAffx.23412.1.S1_x_at4/111+15443287..15443784hypothetical protein
LOC_Os01g27120Os.35465.1.S1_at11/111+15445559..15446622expressed protein
LOC_Os01g27130OsAffx.23413.1.S1_x_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27130OsAffx.23413.2.S1_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27140Os.31088.1.S1_at2/111+15451678..15451989Glutaredoxin-like family protein
LOC_Os01g27150Os.15285.1.S1_a_at11/111+15457791..15466325Cullin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35465.1.S1_at--157--8252Chr01:15446109..15446133 (25 bp)
GGCACTGGCTTCACGGAGATGTTCA
LOC_Os01g27120
Os.35465.1.S1_at--311--6751Chr01:15446129..15446153 (25 bp)
GTTCAGGAACCTGCCAATGGGATTA
LOC_Os01g27120
Os.35465.1.S1_at--61--4391Chr01:15446142..15446166 (25 bp)
CCAATGGGATTAGGGTTGCTGGCCA
LOC_Os01g27120
Os.35465.1.S1_at--1034--10632Chr01:15446184..15446208 (25 bp)
TTCCCTACTACCAGGAAGAGCATCG
LOC_Os01g27120
Os.35465.1.S1_at--271--1372Chr01:15446200..15446224 (25 bp)
AGAGCATCGGCTACACGGACATGAT
LOC_Os01g27120
Os.35465.1.S1_at--702--692Chr01:15446220..15446244 (25 bp)
ATGATGCCGCACAAGGAAGACTACG
LOC_Os01g27120
Os.35465.1.S1_at--1042--632Chr01:15446342..15446366 (25 bp)
ATGACTGTACAGTGTAAATCCGTAG
LOC_Os01g27120
Os.35465.1.S1_at--972--2252Chr01:15446357..15446381 (25 bp)
AAATCCGTAGTGGTGTGTAGAAGTT
LOC_Os01g27120
Os.35465.1.S1_at--272--7912Chr01:15446437..15446461 (25 bp)
GGCTTTAAGCCCTCTTTCTTTATAT
LOC_Os01g27120
Os.35465.1.S1_at--88--151Chr01:15446501..15446525 (25 bp)
ATTACATATATCTCGCGCGTTGCAG
LOC_Os01g27120
Os.35465.1.S1_at--397--4152Chr01:15446516..15446540 (25 bp)
CGCGTTGCAGCGGAATTTGTAGGTA
LOC_Os01g27120
Target Sequence 
GGCACTGGCTTCACGGAGATGTTCAGGAACCTGCCAATGGGATTAGGGTTGCTGGCCAGCATGGTGTTCATGATCTTCCC
TACTACCAGGAAGAGCATCGGCTACACGGACATGATGCCGCACAAGGAAGACTACGGGAAAGGAGGNANTNNNNNNNNNN
NNNNGNNCNNNNNNNCGNNNNNANNANGNNANCANANCNNNNNNNNNCATTTATACTTTATAGGAAGGTATAAATGACTG
TACAGTGTAAATCCGTAGTGGTGTGTAGAAGTTGGTATATATATTGGACATATATCCAAGCATGGAACTGTAGAATGTAC
TCATGTGGGGCTTTAAGCCCTCTTTCTTTATATCTAAACTAGCATATATGTGGTGTAAAAAAATCATCGGAAATTACATA
TATCTCGCGCGTTGCAGCGGAATTTGTAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis