Browse Element(s) Details


Os.35707.1.S1_at

Description gb:AK066188.1
DB_XREF= gi:32976206
TID=Os.35707.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013053A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013053A18, full insert sequence.
FL= gb:AK066188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3358010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33560OsAffx.17987.1.S1_at10/119+19795059..19796364expressed protein
LOC_Os09g33570Os.6424.1.S1_at11/119+19798895..19802007expressed protein
LOC_Os09g33580Os.35707.1.S1_at10/119+19812148..19814715Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g33590OsAffx.6516.1.S1_at5/119+19817629..19821018retrotransposon protein, putative, unclassified
LOC_Os09g33600Os.53527.1.S1_at11/119+19823340..19830851ARF-GAP, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35707.1.S1_at--157--8891Chr09:19813246..19813270 (25 bp)
TGAGGCAGTTGCAATACCAGCTTCT
LOC_Os09g33580
Os.35707.1.S1_at--347--311Chr09:19813233..19813257 (25 bp)
ATACCAGCTTCTGTCCTGAACAGAG
LOC_Os09g33580
Os.35707.1.S1_at--37--2131Chr09:19813214..19813238 (25 bp)
ACAGAGGTAGTAGCCCAGCTCAATC
LOC_Os09g33580
Os.35707.1.S1_at--695--3391Chr09:19813199..19813223 (25 bp)
CAGCTCAATCTCATGCCATCATGGA
LOC_Os09g33580
Os.35707.1.S1_at--273--2191Chr09:19813146..19813170 (25 bp)
ACACTTCAAGTCCAGGGAGGCAGCA
LOC_Os09g33580
Os.35707.1.S1_at--264--9511Chr09:19812995..19813133 (25 bp)
TCTCCCAGGACAATGGCAGCTACAT
LOC_Os09g33580
Os.35707.1.S1_at--214--5471Chr09:19812942..19812966 (25 bp)
GAACTGTTCAATCAAGTGGTGCTCA
LOC_Os09g33580
Os.35707.1.S1_at--851--7771Chr09:19812925..19812949 (25 bp)
GGTGCTCAATAATTACATGTGCTCT
LOC_Os09g33580
Os.35707.1.S1_at--1152--3231Chr09:19812216..19812240 (25 bp)
CAAGCGACCATTTGTTCATATGAAA
LOC_Os09g33580
Os.35707.1.S1_at--747--7571Chr09:19812164..19812188 (25 bp)
GGGCGATGCAACAATCTCTGAATCT
LOC_Os09g33580
Os.35707.1.S1_at--216--9011Chr09:19812147..19812170 (24 bp)
TGAATCTTTGCAACTTTTTCGTCAA
NONE
Target Sequence 
TGAGGCAGTTGCAATACCAGCTTCTGTCCTGAACAGAGGTAGTAGCCCAGCTCAATCTCATGCCATCATGGACACATCAA
ACACCTCTCCTACACCCTACACACTTCAAGTCCAGGGAGGCAGCAACAACAACTCTCTCTCCCAGGACAATGGCAGCTAC
ATCATGCAAACAGTAGGGGAGCCAAGGCAAGAACTGTTCAATCAAGTGGTGCTCAATAATTACATGTGCTCTTTCCAGTA
GGGAGGAGAGGGTGAGAGACAAAAGGCTAGGAGAAGGGACCCTACATTGACAATAGNNNGAGGGAATAATAATATGATTC
GATGGTTTGTGGAAGCACCAGATGAGTTTGAGATGTTGGATCGAGTCCATCCCCTTGTCNGGTGGCATGCATGCAGTAAT
TAAANAGTTGTACTAGAGCTAGGATCAATTTAATTAGAAGTAGTAGTCTCTTCTNTTGTCATTGCCATTGTACTNTACTT
AGACAAAAACAAGCGACCATTTGTTCATATGAAAGGGTCACTGAATTTGCTGCNGTCTCAAGGGCGATGCAACAATCTCT
GAATCTTTGCAACTTTTTCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis