Browse Element(s) Details


Os.6424.1.S1_at

Description gb:AK108370.1
DB_XREF= gi:32993579
TID=Os.6424.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-D07, full insert sequence.
FL= gb:AK108370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3357011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os09g33540NANA9+19781745..19782032hypothetical protein
LOC_Os09g33550Os.49294.1.S1_at11/119+19783043..19786296CCT motif family protein, expressed
LOC_Os09g33560OsAffx.17987.1.S1_at10/119+19795059..19796364expressed protein
LOC_Os09g33570Os.6424.1.S1_at11/119+19798895..19802007expressed protein
LOC_Os09g33580Os.35707.1.S1_at10/119+19812148..19814715Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g33590OsAffx.6516.1.S1_at5/119+19817629..19821018retrotransposon protein, putative, unclassified
LOC_Os09g33600Os.53527.1.S1_at11/119+19823340..19830851ARF-GAP, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6424.1.S1_at--949--3431Chr09:19801412..19801436 (25 bp)
CAGTTGAATCTCTCTGATCTGACAA
LOC_Os09g33570
Os.6424.1.S1_at--657--2171Chr09:19801466..19801490 (25 bp)
ACACTCCGAGTGCAAGTTCACGCGA
LOC_Os09g33570
Os.6424.1.S1_at--60--6951Chr09:19801503..19801527 (25 bp)
GTAGAATTTACTTTGCTGACCGCCT
LOC_Os09g33570
Os.6424.1.S1_at--435--8891Chr09:19801552..19801576 (25 bp)
TGAGTTCAAGCTCTACCTTCCTATT
LOC_Os09g33570
Os.6424.1.S1_at--1019--4271Chr09:19801753..19801777 (25 bp)
CCTCGTGATGACTCGTTTAACGCGA
LOC_Os09g33570
Os.6424.1.S1_at--95--1071Chr09:19801810..19801834 (25 bp)
AGGGATCTTCCTGGTTGTTTGATAA
LOC_Os09g33570
Os.6424.1.S1_at--589--8931Chr09:19801885..19801909 (25 bp)
TGACCCTCATCTAATGCACTGTTAC
LOC_Os09g33570
Os.6424.1.S1_at--768--4291Chr09:19801927..19801951 (25 bp)
CCTACAACTGTACCGGATGGTCCAA
LOC_Os09g33570
Os.6424.1.S1_at--817--6251Chr09:19801942..19801966 (25 bp)
GATGGTCCAACTCCCATGTTTGCAA
LOC_Os09g33570
Os.6424.1.S1_at--533--8751Chr09:19801958..19801982 (25 bp)
TGTTTGCAAACCCAGTAGCACCTAC
LOC_Os09g33570
Os.6424.1.S1_at--832--1491Chr09:19801974..19801998 (25 bp)
AGCACCTACCGTTGTGTTTGGCCAT
LOC_Os09g33570
Target Sequence 
CAGTTGAATCTCTCTGATCTGACAAAAAGAGCCTATGGCACAAATTATGTTGAGACACTCCGAGTGCAAGTTCACGCGAA
TTGCAGACTTCGTAGAATTTACTTTGCTGACCGCCTNTANTCAGAGGAGGAGCTGCCNCCTGAGTTCAAGCTCTACCTTC
CTATTCAGAAGGCATAGACCTTGGAGCAATCATGGAGACGGGTTCTTGATCACGAAAGTAGCCAGCCCCAGGAGATACCA
CTGCGCGCCCTCGTGATGACTCGTTTAACGCGAAGCTATTCACGCGCAAGCCTGCACGAAACCTCAGGGATCTTCCTGGT
TGTTTGATAATTGTAGGAGAGTAGTTAGTCGTAGCCTGAATGAGTTGCCGGGGTACCCACTGACCCTCATCTAATGCACT
GTTACTCGGTGTTGCATCCTCCCCTACAACTGTACCGGATGGTCCAACTCCCATGTTTGCAAACCCAGTAGCACCTACCG
TTGTGTTTGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis