Browse Element(s) Details


Os.51214.1.S1_x_at

Description gb:AK100887.1
DB_XREF= gi:32986096
TID=Os.51214.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023128J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023128J02, full insert sequence.
FL= gb:AK100887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3352011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33490Os.23030.1.S1_at10/119+19748604..19750457No apical meristem protein, expressed
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os09g33540NANA9+19781745..19782032hypothetical protein
LOC_Os09g33550Os.49294.1.S1_at11/119+19783043..19786296CCT motif family protein, expressed
LOC_Os09g33560OsAffx.17987.1.S1_at10/119+19795059..19796364expressed protein
LOC_Os09g33570Os.6424.1.S1_at11/119+19798895..19802007expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51214.1.S1_x_at--937--7571Chr09:19773640..19773664 (25 bp)
GGGCGGCCGCAAGAACATGACATGT
LOC_Os09g33520
Os.51214.1.S1_x_at--112--5251Chr09:19773689..19773713 (25 bp)
GAATCAAATGACTCTAGCTCTCTAG
LOC_Os09g33520
Os.51214.1.S1_x_at--633--6971Chr09:19773735..19773759 (25 bp)
GTACCAATGTTTGCTGTTGTCAATC
LOC_Os09g33520
Os.51214.1.S1_x_at--334--8731Chr09:19773752..19773776 (25 bp)
TGTCAATCAGACACATTTCCCTTAG
LOC_Os09g33520
Os.51214.1.S1_x_at--939--3091Chr09:19773786..19773810 (25 bp)
AATACTGCTGTAGATCGTCCAAGAT
LOC_Os09g33520
Os.51214.1.S1_x_at--476--6151Chr09:19773825..19773849 (25 bp)
GAGGTGCTCTTCGTTATGCTTTGCA
LOC_Os09g33520
Os.51214.1.S1_x_at--531--631Chr09:19773840..19773864 (25 bp)
ATGCTTTGCACCTACGATTTCTGAG
LOC_Os09g33520
Os.51214.1.S1_x_at--658--6531Chr09:19773855..19773879 (25 bp)
GATTTCTGAGCCCATTTGCCAAGAA
LOC_Os09g33520
Os.51214.1.S1_x_at--772--5551Chr09:19773877..19773901 (25 bp)
GAAACCGTCAAGATCTATGCAGCGT
LOC_Os09g33520
Os.51214.1.S1_x_at--262--331Chr09:19773928..19773952 (25 bp)
ATACAACCATAGTTCAGGGCCTGAG
LOC_Os09g33520
Os.51214.1.S1_x_at--1020--8151Chr09:19773952..19773976 (25 bp)
GGAACACAGACGATTCTATCTCTAC
LOC_Os09g33520
Target Sequence 
GGGCGGCCGCAAGAACATGACATGTTGCTCTATGGAGTGTGACATTAGAGAATCAAATGACTCTAGCTCTCTAGAAACTT
CAGAAAATGGCAGTAGTACCAATGTTTGCTGTTGTCAATCAGACACATTTCCCTTAGGTGAAAAGAAATACTGCTGTAGA
TCGTCCAAGATCAATGATCCAGCTGGAGGTGCTCTTCGTTATGCTTTGCACCTACGATTTCTGAGCCCATTTGCCAAGAA
ACCGTCAAGATCTATGCAGCGTAGCAAATCTGNTGTATCATCAGAACCATACAACCATAGTTCAGGGCCTGAGGAACACA
GACGATTCTATCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51214.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis