Browse Element(s) Details


Os.57482.1.S1_x_at

Description gb:D21296.1
DB_XREF= gi:429003
TID=Os.57482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57482 (NCBI UniGene Cluster)
UG_TITLE=SS262 mRNA for pyruvate dehydrogenase beta subunit, partial sequence
DEF=Oryza sativa SS262 mRNA for pyruvate dehydrogenase beta subunit, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g335005/11Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33470Os.17268.1.S1_at10/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.26471.1.S1_at2/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.12779.1.S1_at1/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33480Os.20016.1.S1_at8/119+19736709..19739784expressed protein
LOC_Os09g33490Os.23030.1.S1_at10/119+19748604..19750457No apical meristem protein, expressed
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os09g33540NANA9+19781745..19782032hypothetical protein
LOC_Os09g33550Os.49294.1.S1_at11/119+19783043..19786296CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0010240cellular_componentpyruvate dehydrogenase complex (sensu Viridiplantae)
GO:0003863molecular_function3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
GO:0004802molecular_functiontransketolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57482.1.S1_x_at--531--7951Chr09:19754218..19754358 (25 bp)
GGATACACCAATCACAGAGGCTGGG
LOC_Os09g33500
Os.57482.1.S1_x_at--700--10471NONE
TTACTGGCATTTGCTGTTGGTGCAG
NONE
Os.57482.1.S1_x_at--137--3591Chr09:19754369..19754390 (22 bp)
CATTTGCTGTTGGTGCAGCGTATCA
LOC_Os09g33500
Os.57482.1.S1_x_at--434--8611Chr09:19754376..19754399 (24 bp)
TGGTGCAGCGTATCAAGGTCTTCGG
LOC_Os09g33500
Os.57482.1.S1_x_at--929--9031Chr09:19754379..19754399 (21 bp)
TGCAGCGTATCAAGGTCTTCGGACC
LOC_Os09g33500
Os.57482.1.S1_x_at--1146--6951NONE
GTCTTCGGACCTGTTGTAGAGTCAT
NONE
Os.57482.1.S1_x_at--1032--10571NONE
TTCGGACCTGTTGTAGAGTCATGAA
NONE
Os.57482.1.S1_x_at--627--1331NONE
AGAGTCATGAACATTCAATTTCTCA
NONE
Os.57482.1.S1_x_at--467--132Chr09:19754421..19754880 (25 bp)
ATTCAATTTCTCAATGCAGGCAATT
LOC_Os09g33500
Os.57482.1.S1_x_at--484--9051NONE
TGCAGGCAATTATCATATCATCAAA
NONE
Os.57482.1.S1_x_at--443--231NONE
ATATCATCAAATTCAGCTGTCAAGG
NONE
Target Sequence 
GGATACACCAATCACAGAGGCTGGGNTTACTGGCATTTGCTGTTGGTGCAGCGTATCAAGGTCTTCGGACCTGTTGTAGA
GTCATGAACATTCAATTTCTCAATGCAGGCAATTATCATATCATCAAATTCAGCTGTCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57482.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis