Browse Element(s) Details


Os.16922.1.S1_at

Description gb:CB649096
DB_XREF= gi:29644089
DB_XREF=OSJNEb12N14.r
CLONE=OSJNEb12N14
TID=Os.16922.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16922 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_198928.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g335308/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33490Os.23030.1.S1_at10/119+19748604..19750457No apical meristem protein, expressed
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os09g33540NANA9+19781745..19782032hypothetical protein
LOC_Os09g33550Os.49294.1.S1_at11/119+19783043..19786296CCT motif family protein, expressed
LOC_Os09g33560OsAffx.17987.1.S1_at10/119+19795059..19796364expressed protein
LOC_Os09g33570Os.6424.1.S1_at11/119+19798895..19802007expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16922.1.S1_at--358--1751Chr09:19775121..19775145 (25 bp)
ACCTCTACCTGAATGTTAAGTCCGA
LOC_Os09g33530
Os.16922.1.S1_at--889--10471Chr09:19775106..19775130 (25 bp)
TTAAGTCCGAAGTTGAGAGCTGCAT
LOC_Os09g33530
Os.16922.1.S1_at--211--2131Chr09:19775046..19775070 (25 bp)
ACAGGAATATACTCGCCAGGCTTCT
LOC_Os09g33530
Os.16922.1.S1_at--420--3491Chr09:19775030..19775054 (25 bp)
CAGGCTTCTCTATCAGATGGTTCAT
LOC_Os09g33530
Os.16922.1.S1_at--531--6251Chr09:19775015..19775039 (25 bp)
GATGGTTCATGGTCTTGATGCAGAA
LOC_Os09g33530
Os.16922.1.S1_at--374--10771Chr09:19775001..19775025 (25 bp)
TTGATGCAGAAGTTCCCACATTTGA
LOC_Os09g33530
Os.16922.1.S1_at--850--5471Chr09:19774969..19774993 (25 bp)
GAACTAAGATGGTCACTTGCAGAAT
LOC_Os09g33530
Os.16922.1.S1_at--560--10271Chr09:19774846..19774870 (25 bp)
TTTGACGGCAATATTCAGACCATAG
LOC_Os09g33530
Os.16922.1.S1_at--64--3191Chr09:19774800..19774824 (25 bp)
CAATCTTTGTTCCATTTTGTGAGTT
NONE
Os.16922.1.S1_at--911--6971NONE
GTACCTCGAGGTGCTTAATACCTAG
NONE
Os.16922.1.S1_at--937--8731NONE
TCAAATTTTCCTCTTGGTACCTTCT
NONE
Target Sequence 
ACCTCTACCTGAATGTTAAGTCCGAAGTTGAGAGCTGCATGAANTATCTAAAGGAGAAAAGAGAGAAGGACCCTTACAGG
AATATACTCGCCAGGCTTCTCTATCAGATGGTTCATGGTCTTGATGCAGAAGTTCCCACATTTGANCCGTGAGAACTAAG
ATGGTCACTTGCAGAATTAGATAGGAGTACATTCAAGTCAATTGTTTATATTGTTTCATGCATTTTTGTTTCACATAGTT
ATCAGTTTTTTTNNCTCAGCAATTCTGCTTGTCANTTTGACGGCAATATTCAGACCATAGAGGTTAATAAAATTCAGTTT
ACAATCTTTGTTCCATTTTGTGAGTTTTTGCTGGGGAAAAAACTATGAGGAATTTTACAATCCTTGAGATACCTAAATTT
TACATTAAAATTTTTGGTACCTCGAGGTGCTTAATACCTAGAGGTATCAAATTTTCCTCTTGGTACCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis