Browse Element(s) Details


OsAffx.30126.1.S1_at

Description tigr:9637.m02882
TID=OsAffx.30126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MIL23.20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3352010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33490Os.23030.1.S1_at10/119+19748604..19750457No apical meristem protein, expressed
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os09g33540NANA9+19781745..19782032hypothetical protein
LOC_Os09g33550Os.49294.1.S1_at11/119+19783043..19786296CCT motif family protein, expressed
LOC_Os09g33560OsAffx.17987.1.S1_at10/119+19795059..19796364expressed protein
LOC_Os09g33570Os.6424.1.S1_at11/119+19798895..19802007expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30126.1.S1_at--618--231Chr09:19772552..19772576 (25 bp)
ATATTTATAATTGCCTATATGGACA
LOC_Os09g33520
OsAffx.30126.1.S1_at--312--10191Chr09:19772567..19772591 (25 bp)
TATATGGACAATGCTGCCAGCCATC
LOC_Os09g33520
OsAffx.30126.1.S1_at--338--851Chr09:19772570..19772594 (25 bp)
ATGGACAATGCTGCCAGCCATCTAA
LOC_Os09g33520
OsAffx.30126.1.S1_at--1053--3011Chr09:19772576..19772600 (25 bp)
AATGCTGCCAGCCATCTAATTCATG
LOC_Os09g33520
OsAffx.30126.1.S1_at--258--4791Chr09:19772579..19772603 (25 bp)
GCTGCCAGCCATCTAATTCATGCTG
LOC_Os09g33520
OsAffx.30126.1.S1_at--975--111Chr09:19772594..19772618 (25 bp)
ATTCATGCTGGACACATAGATGTGC
LOC_Os09g33520
OsAffx.30126.1.S1_at--441--291Chr09:19772609..19772633 (25 bp)
ATAGATGTGCTTTACACCATCCATG
LOC_Os09g33520
OsAffx.30126.1.S1_at--689--8691Chr09:19772614..19772638 (25 bp)
TGTGCTTTACACCATCCATGAACTT
LOC_Os09g33520
OsAffx.30126.1.S1_at--857--9051Chr09:19772616..19772640 (25 bp)
TGCTTTACACCATCCATGAACTTCT
LOC_Os09g33520
OsAffx.30126.1.S1_at--92--5491Chr09:19772633..19772657 (25 bp)
GAACTTCTTATTTCTGGTTGTAAAG
LOC_Os09g33520
OsAffx.30126.1.S1_at--406--191NONE
ATTTCTGGTTGTAAAGGCTGTAGAC
NONE
Target Sequence 
ATATTTATAATTGCCTATATGGACAATGCTGCCAGCCATCTAATTCATGCTGGACACATAGATGTGCTTTACACCATCCA
TGAACTTCTTATTTCTGGTTGTAAAGGCTGTAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis