Browse Element(s) Details


Os.49294.1.S1_at

Description gb:AK120589.1
DB_XREF= gi:37990212
TID=Os.49294.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145I18, full insert sequence.
FL= gb:AK120589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3355011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os09g33540NANA9+19781745..19782032hypothetical protein
LOC_Os09g33550Os.49294.1.S1_at11/119+19783043..19786296CCT motif family protein, expressed
LOC_Os09g33560OsAffx.17987.1.S1_at10/119+19795059..19796364expressed protein
LOC_Os09g33570Os.6424.1.S1_at11/119+19798895..19802007expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49294.1.S1_at--118--3471Chr09:19783724..19783748 (25 bp)
CAGGGACAACGCGATGCAACGGTAT
LOC_Os09g33550
Os.49294.1.S1_at--1020--5711Chr09:19783569..19783709 (25 bp)
GACTCGCAGGTATGACAAGCACATC
LOC_Os09g33550
Os.49294.1.S1_at--1036--8951Chr09:19783501..19783525 (25 bp)
TGAAAGGGCGCTTCGTCAGGGCCAC
LOC_Os09g33550
Os.49294.1.S1_at--911--4691Chr09:19783447..19783471 (25 bp)
GCGGCTGAAAATGTGCTTGCGATGT
LOC_Os09g33550
Os.49294.1.S1_at--649--7171Chr09:19783424..19783448 (25 bp)
GTCTGAAATCCAGCGACATCCTCAA
LOC_Os09g33550
Os.49294.1.S1_at--157--2111Chr09:19783409..19783433 (25 bp)
ACATCCTCAACAACGTCAGTTCAGT
LOC_Os09g33550
Os.49294.1.S1_at--895--9091Chr09:19783358..19783382 (25 bp)
TGCTGCATCACCAACACTTTTTGTG
LOC_Os09g33550
Os.49294.1.S1_at--285--91Chr09:19783176..19783200 (25 bp)
ATTCCACTCAGAAGTTTTTGCAGCC
LOC_Os09g33550
Os.49294.1.S1_at--880--10391Chr09:19783161..19783185 (25 bp)
TTTTGCAGCCCCTGAAAATGTGGCA
LOC_Os09g33550
Os.49294.1.S1_at--479--7531Chr09:19783142..19783166 (25 bp)
GTGGCAAGTTATGTAGGACCTGTTT
LOC_Os09g33550
Os.49294.1.S1_at--750--6851Chr09:19783121..19783145 (25 bp)
GTTTGTAATTTTGTTGCCACTTTCA
LOC_Os09g33550
Target Sequence 
CAGGGACAACGCGATGCAACGGTATAGAGAAAAGAGAAAGACTCGCAGGTATGACAAGCACATCAGGTACGAGTCGAGGA
AGATGAGAGCCGACACGAGGACGCGGGTGAAAGGGCGCTTCGTCAGGGCCACTGACATCTTCAACGTCGGTGGCGGCGAC
GGCGGCTGAAAATGTGCTTGCGATGTCTGAAATCCAGCGACATCCTCAACAACGTCAGTTCAGTGGGGATTATTGCTGGG
GGAATGGAGATGCTGCATCACCAACACTTTTTGTGAATAGCCTGAACTGAAACTTGTTTCCTGGAGTAGTAGAATACATA
CGATATCACATCCATGATCTTGTATTGTTGTATTTTTTTTTTTGAGGGATTGTTTTTTTTTAATGACAAGTTTTTTTTGA
ATGACTTTTTGAGGGATTGTTGTATGGTTATTATTCCACTCAGAAGTTTTTGCAGCCCCTGAAAATGTGGCAAGTTATGT
AGGACCTGTTTGTAATTTTGTTGCCACTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis