Browse Element(s) Details


Os.17791.1.S1_at

Description gb:AK067488.1
DB_XREF= gi:32977506
TID=Os.17791.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110D20, full insert sequence.
FL= gb:AK067488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3351011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33470Os.17268.1.S1_at10/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.26471.1.S1_at2/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.12779.1.S1_at1/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33480Os.20016.1.S1_at8/119+19736709..19739784expressed protein
LOC_Os09g33490Os.23030.1.S1_at10/119+19748604..19750457No apical meristem protein, expressed
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os09g33540NANA9+19781745..19782032hypothetical protein
LOC_Os09g33550Os.49294.1.S1_at11/119+19783043..19786296CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17791.1.S1_at--123--6631Chr09:19764880..19764904 (25 bp)
GTTGGTGCCAAATTCTGCTCCTTTG
LOC_Os09g33510
Os.17791.1.S1_at--501--5091Chr09:19764905..19764929 (25 bp)
GCACCCAGAGGCCAGGATCATTTTA
LOC_Os09g33510
Os.17791.1.S1_at--1156--991Chr09:19764918..19764942 (25 bp)
AGGATCATTTTAGGCCGAGGCAAAC
LOC_Os09g33510
Os.17791.1.S1_at--113--4031Chr09:19765001..19765025 (25 bp)
CGCAGTTTTTCGATACCTTCTAGGG
LOC_Os09g33510
Os.17791.1.S1_at--958--5271Chr09:19765092..19765116 (25 bp)
GAATGAGCCTTTCTAGTCTTCCTTC
LOC_Os09g33510
Os.17791.1.S1_at--1043--9571Chr09:19765108..19765132 (25 bp)
TCTTCCTTCAGCACAAACATCGTTG
LOC_Os09g33510
Os.17791.1.S1_at--975--411Chr09:19765137..19765161 (25 bp)
ATCATCGGCCATTGTCAGGAGCTAC
LOC_Os09g33510
Os.17791.1.S1_at--527--4832Chr09:19765697..19765721 (25 bp)
GCTCAGCTATCTCGCCATGGAAGAA
LOC_Os09g33510
Os.17791.1.S1_at--72--1191Chr09:19765735..19765759 (25 bp)
AGTATGTGAACTCGGCCAATATTGC
LOC_Os09g33510
Os.17791.1.S1_at--850--6851Chr09:19765871..19765895 (25 bp)
GTTTGTTGTGCCCTTGAGATGACTT
LOC_Os09g33510
Os.17791.1.S1_at--578--6031Chr09:19765886..19765910 (25 bp)
GAGATGACTTGAATGCCACCTGTTT
LOC_Os09g33510
Target Sequence 
GTTGGTGCCAAATTCTGCTCCTTTGGCACCCAGAGGCCAGGATCATTTTAGGCCGAGGCAAACACCACCAAGTGCTCCCC
AAACTGCATCACCTTTACCGACACCACCTGGGCCTATATCCCGCAGTTTTTCGATACCTTCTAGGGGCATGAGAACATCA
GGTATTTCAGATGGTAAAGAGACAGAAGATCTTCAGGATAAAGGGCCTGCCAGAATGAGCCTTTCTAGTCTTCCTTCAGC
ACAAACATCGTTGGAGGATCATCGGCCATTGTCAGGAGCTACCGAGTCAGTTAGCAAAACATAGGAATATTTGGTGTTGA
GGTGAAAGTTTATTTATCAAGGGGCTCAGCTATCTCGCCATGGAAGAATATTGTACATATTAGTATGTGAACTCGGCCAA
TATTGCAAATTAGTTGGTGTTTCGTTTGTATCCCCCATGGTTAAGATGTAATTGTGCAAATAACGAGTTGTGGAATAAAA
TCTCCATTTTTCTCTCCGATTAATTGATGTAAGATTTGTTTGTTGTGCCCTTGAGATGACTTGAATGCCACCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis