Browse Element(s) Details


Os.20016.1.S1_at

Description gb:AK106007.1
DB_XREF= gi:32991216
TID=Os.20016.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A08, full insert sequence.
FL= gb:AK106007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g334808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33460Os.49632.1.S1_a_at11/119+19710358..19712402Double-stranded RNA binding motif family protein, expressed
LOC_Os09g33464NANA9+19723592..19723891hypothetical protein
LOC_Os09g33470Os.17268.1.S1_at10/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.26471.1.S1_at2/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.12779.1.S1_at1/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33480Os.20016.1.S1_at8/119+19736709..19739784expressed protein
LOC_Os09g33490Os.23030.1.S1_at10/119+19748604..19750457No apical meristem protein, expressed
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20016.1.S1_at--495--7271Chr09:19737185..19737209 (25 bp)
GTGCGCCTGGCTACCAAGGTGGACC
LOC_Os09g33480
Os.20016.1.S1_at--789--8491Chr09:19737016..19737040 (25 bp)
TGGCTATGCACCAGGCTACCATGGC
LOC_Os09g33480
Os.20016.1.S1_at--422--1871Chr09:19736860..19736884 (25 bp)
ACGAGCGTAACTTCATTTGTTTCCT
LOC_Os09g33480
Os.20016.1.S1_at--428--10791Chr09:19736844..19736868 (25 bp)
TTGTTTCCTGTTGTTATCGCATGTA
LOC_Os09g33480
Os.20016.1.S1_at--1154--9551Chr09:19736816..19736840 (25 bp)
TCTTATGCTGCTTTGTGAACTCGGT
LOC_Os09g33480
Os.20016.1.S1_at--851--7351Chr09:19736802..19736826 (25 bp)
GTGAACTCGGTTTCGTATGTGTCGA
LOC_Os09g33480
Os.20016.1.S1_at--849--7451Chr09:19736784..19736808 (25 bp)
GTGTCGAGCAATCACTTCAATGTGT
LOC_Os09g33480
Os.20016.1.S1_at--504--791Chr09:19736765..19736789 (25 bp)
ATGTGTCTGGAACTAGCGGTTGTTT
LOC_Os09g33480
Os.20016.1.S1_at--848--10231NONE
TTTGGTCAACTAGTGCATTTGGTCC
NONE
Os.20016.1.S1_at--336--1971NONE
ACTGCTAACTGTGTTCGTGTACGGA
NONE
Os.20016.1.S1_at--333--5411Chr09:19736651..19736675 (25 bp)
GAAGCTGCTCTGTTAATTCCATTTC
NONE
Target Sequence 
GTGCGCCTGGCTACCAAGGTGGACCCCCTGGCTATCAAGGTAGCAACCAGGGCTACCAAGGTCCACCCCCACCCCCACCA
TCTGCTTACCAAGGCAACAACCCTGGATACCAGGGAGGAGGGCCAGGTTACCAGNGCGGCAACCCGCCTCCTTACCAAGG
TGGCAACCCTGGCTATGCACCAGGCTACCATGGCCAAGGAGGCAACCCTAGCTACCAGCAAGGCGGCGATAACTACAATG
CCGGTGNGCCGGCTTATGAGAGGGACGGACAAGGGAGGAATTACCAGTAGAACACTGCTAGAATAAACGATATGTAGAAT
CTAGTACGAGCGTAACTTCATTTGTTTCCTGTTGTTATCGCATGTATACTCTTATGCTGCTTTGTGAACTCGGTTTCGTA
TGTGTCGAGCAATCACTTCAATGTGTCTGGAACTAGCGGTTGTTTGAAGCACTTAAAACATTATAAATGTTTGGTCAACT
AGTGCATTTGGTCCNAAATAAATACACTGCTAACTGTGTTCGTGTACGGAGCTCGGAAGCTGCTCTGTTAATTCCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis