Browse Element(s) Details


Os.35827.1.S1_at

Description gb:AK065614.1
DB_XREF= gi:32975632
TID=Os.35827.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor protein kinase (OSJNBa0004G10.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026J11, full insert sequence.
FL= gb:AK065614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1451010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14470NANA1+8098801..8100282hypothetical protein
LOC_Os01g14479NANA1+8103859..8104255NA
LOC_Os01g14490NANA1+8112357..8117086retrotransposon protein, putative, unclassified
LOC_Os01g14510Os.35827.1.S1_at10/111+8122474..8124894Protein kinase domain containing protein, expressed
LOC_Os01g14514Os.5216.1.S1_at9/111+8127060..8127824expressed protein
LOC_Os01g14520OsAffx.23246.1.S1_x_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14520OsAffx.23246.1.S1_at11/111+8129883..8132196C4-dicarboxylate transporter/malic acid transport protein, expressed
LOC_Os01g14530Os.30173.2.S1_x_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.2.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14530Os.30173.1.S1_at11/111+8143244..8144861AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g14540Os.33904.1.S1_at11/111+8149597..8150487Stigma-specific protein, Stig1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35827.1.S1_at--551--4531NONE
GCCCCAGAGTACTTCGAGACCGGGA
NONE
Os.35827.1.S1_at--472--6831Chr01:8123421..8123445 (25 bp)
GTTTCTTGAGAACGGCACGAGGCTA
LOC_Os01g14510
Os.35827.1.S1_at--1002--5631Chr01:8122856..8122880 (25 bp)
GACAGCGCGCTGGAGTCGTCGTTCC
LOC_Os01g14510
Os.35827.1.S1_at--1027--1411Chr01:8122797..8122821 (25 bp)
AGACAAGTGCCTCGAGTCTGAGCCC
LOC_Os01g14510
Os.35827.1.S1_at--545--5151Chr01:8122771..8122795 (25 bp)
GCAACAGGCCAACCATGGCTGAAGT
LOC_Os01g14510
Os.35827.1.S1_at--665--1411Chr01:8122723..8122747 (25 bp)
AGAACACTACTGCATGATCGGTTGA
LOC_Os01g14510
Os.35827.1.S1_at--948--6391Chr01:8122708..8122732 (25 bp)
GATCGGTTGATTAGCACGTGTATAC
LOC_Os01g14510
Os.35827.1.S1_at--655--2011Chr01:8122594..8122618 (25 bp)
ACTCAAGTGTTGTTTTTGCGCAATC
LOC_Os01g14510
Os.35827.1.S1_at--971--6811Chr01:8122583..8122607 (25 bp)
GTTTTTGCGCAATCCAGTTCTCAGA
LOC_Os01g14510
Os.35827.1.S1_at--180--10491Chr01:8122551..8122575 (25 bp)
TTAAGGCGATTGTTTTCTGGCGATC
LOC_Os01g14510
Os.35827.1.S1_at--331--6791Chr01:8122540..8122564 (25 bp)
GTTTTCTGGCGATCGAGCTACCAAA
LOC_Os01g14510
Target Sequence 
GCCCCAGAGTACTTCGAGACCGGGAGGGCGACGACGAAGGGCGACGTGTACAGCTACGGCGTGGTGCTGCTGGAGCTCCT
CACCGGGATGAGGCCGACGGACGAGTCGTTTCTTGAGAACGGCACGAGGCTAGTGACCTGGGTGAAGGAGACGATGGAGG
AGAAGAGGGAGGAGCACGCGGTCGACAGCGCGCTGGAGTCGTCGTTCCCGGCGGAGGAGGTGAAGCTGGTGTTCAAAGTG
GCAGACAAGTGCCTCGAGTCTGAGCCCTGCAACAGGCCAACCATGGCTGAAGTTGTCAAGCTGCTGGAGCAAGCCAAGAA
CACTACTGCATGATCGGTTGATTAGCACGTGTATACGTACAGAATATCATGTACTGTATACATGTGTTCATACAGTATAT
ACATAGTAGGTCCTTAGTTTAGTTAGTTGAAGACTTTTTTTTTTCACTCAAGTGTTGTTTTTGCGCAATCCAGTTCTCAG
ATNGATGTTTAAGGCGATTGTTTTCTGGCGATCGAGCTACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis