Browse Element(s) Details


Os.35895.1.S1_at

Description gb:AK065291.1
DB_XREF= gi:32975309
TID=Os.35895.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0690B02.13 (P0690B02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N02, full insert sequence.
FL= gb:AK065291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5230411/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52330NANA1+30402471..30403973NB-ARC domain containing protein, expressed
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed
LOC_Os01g52350OsAffx.2311.1.S1_at11/111+30409693..30410557hypothetical protein
LOC_Os01g52360OsAffx.23763.1.S1_at11/111+30410839..30412329NB-ARC domain containing protein
LOC_Os01g52370Os.22675.1.S1_at3/111+30415035..30415785expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35895.1.S1_at--295--6172Chr12:7502352..7502434 (25 bp)
GAGGAGTTAGTTTGATCCAAAATAA
NONE
Os.35895.1.S1_at--1050--691Chr01:30393054..30393078 (25 bp)
ATGTTGGTTGTCAAACTAGTTTAGC
LOC_Os01g52304
Os.35895.1.S1_at--97--7911Chr01:30393059..30393083 (25 bp)
GGTTGTCAAACTAGTTTAGCTCCAT
LOC_Os01g52304
Os.35895.1.S1_at--606--7091Chr01:30393063..30393087 (25 bp)
GTCAAACTAGTTTAGCTCCATCCAT
LOC_Os01g52304
Os.35895.1.S1_at--888--2391Chr01:30393066..30393090 (25 bp)
AAACTAGTTTAGCTCCATCCATATG
LOC_Os01g52304
Os.35895.1.S1_at--451--2031Chr01:30393068..30393092 (25 bp)
ACTAGTTTAGCTCCATCCATATGGC
LOC_Os01g52304
Os.35895.1.S1_at--223--6831Chr01:30393072..30393096 (25 bp)
GTTTAGCTCCATCCATATGGCACAT
LOC_Os01g52304
Os.35895.1.S1_at--355--10011Chr01:30393075..30393099 (25 bp)
TAGCTCCATCCATATGGCACATCAA
LOC_Os01g52304
Os.35895.1.S1_at--918--8231Chr01:30393090..30393114 (25 bp)
GGCACATCAAACAAATATGGATTCT
LOC_Os01g52304
Os.35895.1.S1_at--610--271Chr01:30393104..30393128 (25 bp)
ATATGGATTCTATAACAGCAACAGT
LOC_Os01g52304
Os.35895.1.S1_at--225--7931Chr01:30393108..30393132 (25 bp)
GGATTCTATAACAGCAACAGTTTAT
LOC_Os01g52304
Target Sequence 
GAGGAGTTAGTTTGATCCAAAATAATGTTGGTTGTCAAACTAGTTTAGCTCCATCCATATGGCACATCAAACAAATATGG
ATTCTATAACAGCAACAGTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis