Browse Element(s) Details


Os.35895.2.S1_x_at

Description gb:NM_191807.1
DB_XREF= gi:34910697
GEN=P0690B02.13
TID=Os.35895.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0690B02.13 (P0690B02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0690B02.13 (P0690B02.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5230411/11NB-ARC domain containing protein, expressed
LOC_Os01g523201/11NB-ARC domain containing protein, expressed
LOC_Os01g523801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52330NANA1+30402471..30403973NB-ARC domain containing protein, expressed
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed
LOC_Os01g52350OsAffx.2311.1.S1_at11/111+30409693..30410557hypothetical protein
LOC_Os01g52360OsAffx.23763.1.S1_at11/111+30410839..30412329NB-ARC domain containing protein
LOC_Os01g52370Os.22675.1.S1_at3/111+30415035..30415785expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35895.2.S1_x_at--106--5431Chr01:30392496..30392520 (25 bp)
GAAGCCTTTTGGTATCTGTTCAAGA
LOC_Os01g52304
Os.35895.2.S1_x_at--988--8011Chr01:30392549..30392573 (25 bp)
GGAGGAGCCGAAGCTAGCATCCATT
LOC_Os01g52304
Os.35895.2.S1_x_at--906--7831Chr01:30392665..30392689 (25 bp)
GGTACAATTTTCTCAAACGCTTGAA
LOC_Os01g52304
Os.35895.2.S1_x_at--215--5671Chr01:30392704..30392728 (25 bp)
GACATTTCCGTCTGCTAGGTGAACA
LOC_Os01g52304
Os.35895.2.S1_x_at--332--3751Chr01:30392738..30392762 (25 bp)
CTCATACAAGTCTAACCGTGGGCGT
LOC_Os01g52304
Os.35895.2.S1_x_at--261--2631Chr01:30392751..30392775 (25 bp)
AACCGTGGGCGTACTTACATATGGA
LOC_Os01g52304
Os.35895.2.S1_x_at--751--2371Chr01:30392783..30392807 (25 bp)
AAACTACTATGGTGACGGTGACGCA
LOC_Os01g52304
Os.35895.2.S1_x_at--858--7371Chr01:30392800..30392824 (25 bp)
GTGACGCAGCGACATACAATCTTTA
LOC_Os01g52304
Os.35895.2.S1_x_at--416--8213Chr01:30419685..30419709 (25 bp)
GGAATGGCAATCCAGCATACCTCCA
LOC_Os01g52380
Os.35895.2.S1_x_at--1068--3071Chr01:30392965..30392989 (25 bp)
AATACGGGATACTTGCACGGCAGCC
LOC_Os01g52304
Os.35895.2.S1_x_at--939--8251Chr01:30392983..30393007 (25 bp)
GGCAGCCGCTTATGCTACCTAAAAG
LOC_Os01g52304
Target Sequence 
GAAGCCTTTTGGTATCTGTTCAAGACGGTTGCATTTGGGAGCACAAATCCTGAGGAGGAGCCGAAGCTAGCATCCATTTG
TATGGAGATCGCAGACTTGGTGAATGGATCATTCATGGAATCAAATGTTGTTGGGAGCATACTCAGATCTAATATTACTG
CTCAATTCTGGTACAATTTTCTCAAACGCTTGAAATATTTCACTGACAGACATTTCCGTCTGCTAGGTGAACACCCAAGA
GACTCATACAAGTCTAACCGTGGGCGTACTTACATATGGATGCATAAAAACTACTATGGTGACGGTGACGCAGCGACATA
CAATCTTTACCATGCAAATTCTGCAGGACTAAATAATCTACCAATGATACGAATGAGCGATATGCTTATCGGAAATGTTA
AGCCTCAGAAGAAATGTGAAGCCCTGGAATGGCAATCCAGCATACCTCCATACTATAGCTATATCGTGCAATACGGGATA
CTTGCACGGCAGCCGCTTATGCTACCTAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35895.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis