Browse Element(s) Details


Os.36438.1.S1_at

Description gb:AK063402.1
DB_XREF= gi:32973420
TID=Os.36438.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endo-1,4-beta-xylanase X-1 (OSJNBa0083M16.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A04, full insert sequence.
FL= gb:AK063402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g042905/11endo-1,4-beta-xylanase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04260Os.10829.1.S1_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04260Os.10829.2.S1_x_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04270OsAffx.1928.1.S1_s_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04270OsAffx.1928.1.S1_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04280Os.28514.1.S1_at11/111+1899538..1902042calmodulin-binding protein, putative, expressed
LOC_Os01g04290Os.36438.1.S1_at5/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04290OsAffx.14829.2.S1_x_at1/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04300Os.6014.2.S1_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300Os.6014.2.S1_x_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300OsAffx.14829.2.S1_x_at1/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04310NANA1+1916551..1917233transposon protein, putative, unclassified
LOC_Os01g04320OsAffx.10903.2.S1_at11/111+1922127..1923305transposon protein, putative, unclassified
LOC_Os01g04330Os.36767.1.S1_at11/111+1927818..1928706EF hand family protein, expressed
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36438.1.S1_at--496--9611Chr01:1904021..1904045 (25 bp)
TCATGCAGGGCAACATGTGGCGCTC
LOC_Os01g04290
Os.36438.1.S1_at--458--1791Chr01:1903949..1903973 (25 bp)
ACCGCTACGTGGGTCTCCGGCAGGA
LOC_Os01g04290
Os.36438.1.S1_at--74--4571Chr01:1903832..1903856 (25 bp)
GCGCCGGCGAGATGAAGTACCAGCA
LOC_Os01g04290
Os.36438.1.S1_at--744--8971Chr01:1903820..1903844 (25 bp)
TGAAGTACCAGCAGTTCGACGTCGG
LOC_Os01g04290
Os.36438.1.S1_at--930--1891Chr01:1903802..1903826 (25 bp)
ACGTCGGCAAGGGAGATGGCCCACT
LOC_Os01g04290
Os.36438.1.S1_at--874--7311Chr01:1903776..1903800 (25 bp)
GTGCTCGACATGGATCTCTAGCCAG
NONE
Os.36438.1.S1_at--574--7671Chr01:1903733..1903757 (25 bp)
GGGATTCATACGTTCATACGTGTAG
NONE
Os.36438.1.S1_at--202--10031Chr01:1903704..1903728 (25 bp)
TAGAACGGTTAAGTGCATTGCATAT
NONE
Os.36438.1.S1_at--597--6551Chr01:1903608..1903632 (25 bp)
GATTATAGGGCCTTGGCGTGTCCGT
NONE
Os.36438.1.S1_at--1019--8251Chr01:1903594..1903618 (25 bp)
GGCGTGTCCGTGTGTGGTAATTTAA
NONE
Os.36438.1.S1_at--72--211Chr01:1903543..1903567 (25 bp)
ATTTGCTACCTACAGATTTGCAGTA
NONE
Target Sequence 
TCATGCAGGGCAACATGTGGCGCTCCCACGCGCACCTCGTCGACGCCGACGGGAAGCTCAACGAGGCCGGCCACCGCTAC
GTGGGTCTCCGGCAGGAGTGGACGTCGCACGCGCGGGGGCAGGTCGACGGCAGCGGCCACTTCAAGTTCAGGGGGTTCCA
CGGCAAGTACGTCGTGCAGCTCACCACCGGCGCCGGCGAGATGAAGTACCAGCAGTTCGACGTCGGCAAGGGAGATGGCC
CACTCGTGCTCGACATGGATCTCTAGCCAGCCAACTCCATCATCGGGGGGGATTCATACGTTCATACGTGTAGTACATAG
AACGGTTAAGTGCATTGCATATATACGGATTATATTGGGATTGGGATTATTTTTTAGATCGATCAGAAGAGATGTGATGT
TGTTTTATGTTGTGATTATAGGGCCTTGGCGTGTCCGTGTGTGGTAATTTAAACCGTAAAAGAGGGTATTGGATTTGTAT
TTGCTACCTACAGATTTGCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis