Browse Element(s) Details


Os.3655.1.S1_at

Description gb:AK070443.1
DB_XREF= gi:32980467
TID=Os.3655.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.3655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054D03, full insert sequence.
FL= gb:AK070443.1 gb:AK060689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1874411/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18680OsAffx.22927.1.S1_x_at7/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18680OsAffx.8420.1.S1_x_at1/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18690NANA1+10538588..10540496retrotransposon protein, putative, unclassified
LOC_Os01g18700NANA1+10541749..10543926retrotransposon protein, putative, unclassified
LOC_Os01g18710OsAffx.23294.2.S1_at11/111+10546018..10547862hypothetical protein
LOC_Os01g18720OsAffx.23294.3.A1_at11/111+10548616..10549289hypothetical protein
LOC_Os01g18730OsAffx.20135.1.A1_x_at1/111+10556665..10557747hypothetical protein
LOC_Os01g18744Os.3655.1.S1_at11/111+10558108..10562090Transferase family protein, expressed
LOC_Os01g18760NANA1+10569485..10570999hypothetical protein
LOC_Os01g18770NANA1+10572708..10573307hypothetical protein
LOC_Os01g18780OsAffx.23296.1.S1_at11/111+10575177..10577206hypothetical protein
LOC_Os01g18780OsAffx.23296.1.S1_s_at11/111+10575177..10577206hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3655.1.S1_at--456--6171Chr01:10558569..10558593 (25 bp)
GAGGATCCGTACGAGCTGAGCTTCA
LOC_Os01g18744
Os.3655.1.S1_at--764--8911Chr01:10558553..10558577 (25 bp)
TGAGCTTCACGTACGATTCCCTGTT
LOC_Os01g18744
Os.3655.1.S1_at--314--4571Chr01:10558394..10558418 (25 bp)
GCGCCCGGATCATGACGCAGTGCGT
LOC_Os01g18744
Os.3655.1.S1_at--1156--2911Chr01:10558332..10558356 (25 bp)
AAGGCCTTCGACAAGTAAAATGCTT
LOC_Os01g18744
Os.3655.1.S1_at--379--10211Chr01:10558289..10558313 (25 bp)
TATTGTTACTACTTCTATGGGCTCG
LOC_Os01g18744
Os.3655.1.S1_at--332--791Chr01:10558273..10558297 (25 bp)
ATGGGCTCGTTGCTCAATGGGCTTT
LOC_Os01g18744
Os.3655.1.S1_at--664--3671Chr01:10558242..10558266 (25 bp)
CTTTTGTTTTGTGTGTGTGGGCCGA
LOC_Os01g18744
Os.3655.1.S1_at--347--8671Chr01:10558227..10558251 (25 bp)
TGTGGGCCGACACGATTGGTCAAAA
LOC_Os01g18744
Os.3655.1.S1_at--584--3431Chr01:10558185..10558209 (25 bp)
CAGTTGTAATAAGATGGTCCACGCA
LOC_Os01g18744
Os.3655.1.S1_at--997--7771Chr01:10558170..10558194 (25 bp)
GGTCCACGCATCATGGATTAATCGT
LOC_Os01g18744
Os.3655.1.S1_at--529--1151Chr01:10558133..10558157 (25 bp)
AGTACTACACGGATTTGTTAACAAG
LOC_Os01g18744
Target Sequence 
GAGGATCCGTACGAGCTGAGCTTCACGTACGATTCCCTGTTCGTCTCCGACTGGACGCGGCTGGGGTTCCTGGAGGCGGA
CTACGGGTGGGGGCCGCCGTCGCACGTCATACCCTTCGCGTACTACCCGTTCATGGCCGTCGCCATCATCGGCGCGCCGC
CGGTGCCCAAGACCGGCGCCCGGATCATGACGCAGTGCGTCGAGGACGACCACCTGCCGGCGTTCAAGGAGGAGATCAAG
GCCTTCGACAAGTAAAATGCTTGTGAAATGTGAACTTTGTTATTGTTACTACTTCTATGGGCTCGTTGCTCAATGGGCTT
TTTTTTGCTTTTGTTTTGTGTGTGTGGGCCGACACGATTGGTCAAAAGGGATTTGGTGGAGGCCCAGTTGTAATAAGATG
GTCCACGCATCATGGATTAATCGTTAATTGTAAGGTAGTACTACACGGATTTGTTAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis