Browse Element(s) Details


Os.36568.1.S1_x_at

Description gb:AK063104.1
DB_XREF= gi:32973122
TID=Os.36568.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-C12, full insert sequence.
FL= gb:AK063104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3815011/11glutathione S-transferase parC, putative, expressed
LOC_Os10g381891/11glutathione S-transferase GST 34, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38110Os.10360.1.S1_at11/1110+20082346..20086498Cytochrome P450 family protein, expressed
LOC_Os10g38120NANA10+20097289..20100849Cytochrome P450 family protein
LOC_Os10g38130OsAffx.30710.1.S1_at11/1110+20101530..20102038hypothetical protein
LOC_Os10g38140Os.13014.1.S1_a_at11/1110+20102322..20103581Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38150Os.36568.1.S1_x_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38150Os.46637.1.S1_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38160NANA10+20108236..20109794glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38170OsAffx.20181.1.S1_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38170OsAffx.20181.1.S1_x_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38189Os.49755.1.S1_at4/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed
LOC_Os10g38189Os.36568.1.S1_x_at1/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36568.1.S1_x_at--1160--8631Chr10:20105540..20105563 (24 bp)
TGGGCACAGTACATCGACGACAAGT
LOC_Os10g38150
Os.36568.1.S1_x_at--1009--8571Chr10:20105348..20105372 (25 bp)
TGGTTGAAATGTCCACCGCTCTGAA
LOC_Os10g38150
Os.36568.1.S1_x_at--789--8012Chr10:20119666..20119690 (25 bp)
GGAGGCATTTGTCAAGTGCAGCCAA
LOC_Os10g38189
Os.36568.1.S1_x_at--596--10851Chr10:20105240..20105264 (25 bp)
TTGGGTCGTTCCTCGGATGGATTAA
LOC_Os10g38150
Os.36568.1.S1_x_at--691--2371Chr10:20105164..20105188 (25 bp)
AAACCTGGCTGCTTGGGCGGATCGC
LOC_Os10g38150
Os.36568.1.S1_x_at--86--1831Chr10:20105114..20105138 (25 bp)
ACGCCATGCCTGACGCCGATAAATT
LOC_Os10g38150
Os.36568.1.S1_x_at--304--3171Chr10:20105093..20105117 (25 bp)
AATTGGTCGAGTTCGCCGTTAAGCA
LOC_Os10g38150
Os.36568.1.S1_x_at--116--2711Chr10:20105073..20105097 (25 bp)
AAGCATGCCGCTTCGATGAAGGCTT
LOC_Os10g38150
Os.36568.1.S1_x_at--10--7991Chr10:20105047..20105071 (25 bp)
GGATGCTCCCAAGTGATCAGCGAAT
LOC_Os10g38150
Os.36568.1.S1_x_at--780--2711Chr10:20105021..20105045 (25 bp)
AAGCATTCTCCTTTGTGTTGCATGT
LOC_Os10g38150
Os.36568.1.S1_x_at--814--6991Chr10:20104998..20105022 (25 bp)
GTACTGCATTACATCATCGGATCTG
LOC_Os10g38150
Target Sequence 
TGGGCACAGTACATCGACGACAAGTTTCCTCGGGGGACTCGCGTGTTGAGAGGAACCGTGGCCGGAGAGGAACCGTGGTT
GAAATGTCCACCGCTCTGAAGCATCTGGAGGAGGCATTTGTCAAGTGCAGCCAAGGGAAGAAATACTTCGGCGGCGACAA
AATCGGCTACCTGGACATCGCTCTTGGGTCGTTCCTCGGATGGATTAAGGCGGTGGAGAAGTTCGCCGGCGTCGAGCTCC
TTGACGAGGCGAAGGTTCCAAACCTGGCTGCTTGGGCGGATCGCTTCTGCGCGCATCCGGCCGTGGTGGACGCCATGCCT
GACGCCGATAAATTGGTCGAGTTCGCCGTTAAGCATGCCGCTTCGATGAAGGCTTTGGATGCTCCCAAGTGATCAGCGAA
TTAAGCATTCTCCTTTGTGTTGCATGTACTGCATTACATCATCGGATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36568.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis