Browse Element(s) Details


Os.36593.1.S1_at

Description gb:AK063062.1
DB_XREF= gi:32973080
TID=Os.36593.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F11, full insert sequence.
FL= gb:AK063062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1840011/1126 kDa endochitinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein
LOC_Os01g18400Os.36593.1.S1_at11/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_x_at10/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_at8/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18410Os.9858.2.S1_x_at11/111+10343489..10346650hypothetical protein
LOC_Os01g18410Os.9858.1.S1_at3/111+10343489..10346650hypothetical protein
LOC_Os01g18420OsAffx.11096.1.S1_at11/111+10349207..10349929SRF-type transcription factor family protein
LOC_Os01g18440OsAffx.11097.1.S1_at11/111+10363189..10364109SRF-type transcription factor family protein

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Gene Ontology Classification
GO idTypeName
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36593.1.S1_at--901--5071Chr01:10338943..10338967 (25 bp)
GCAGCCCTTCTAGCTTGCTATAAAA
LOC_Os01g18400
Os.36593.1.S1_at--837--4911Chr01:10338931..10338955 (25 bp)
GCTTGCTATAAAAATTCATGTCGTT
LOC_Os01g18400
Os.36593.1.S1_at--383--3151Chr01:10338919..10338943 (25 bp)
AATTCATGTCGTTTCTCATGTCGCT
LOC_Os01g18400
Os.36593.1.S1_at--475--771Chr01:10338914..10338938 (25 bp)
ATGTCGTTTCTCATGTCGCTGCTTG
LOC_Os01g18400
Os.36593.1.S1_at--665--771Chr01:10338902..10338926 (25 bp)
ATGTCGCTGCTTGCGATTAGCTGTA
LOC_Os01g18400
Os.36593.1.S1_at--320--4771Chr01:10338897..10338921 (25 bp)
GCTGCTTGCGATTAGCTGTAAGATT
LOC_Os01g18400
Os.36593.1.S1_at--137--2871Chr01:10338865..10338889 (25 bp)
AAGTGTTGTTGCGTGAACTGTGTAC
LOC_Os01g18400
Os.36593.1.S1_at--976--7351Chr01:10338853..10338877 (25 bp)
GTGAACTGTGTACACGCCGTCTTGT
LOC_Os01g18400
Os.36593.1.S1_at--101--7451Chr01:10338846..10338870 (25 bp)
GTGTACACGCCGTCTTGTTTTGTCT
LOC_Os01g18400
Os.36593.1.S1_at--128--4511Chr01:10338838..10338862 (25 bp)
GCCGTCTTGTTTTGTCTCATTCATT
LOC_Os01g18400
Os.36593.1.S1_at--1086--6791Chr01:10338830..10338854 (25 bp)
GTTTTGTCTCATTCATTGGAAATTG
LOC_Os01g18400
Target Sequence 
GCAGCCCTTCTAGCTTGCTATAAAAATTCATGTCGTTTCTCATGTCGCTGCTTGCGATTAGCTGTAAGATTTAATTTTAA
GTGTTGTTGCGTGAACTGTGTACACGCCGTCTTGTTTTGTCTCATTCATTGGAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis