Browse Element(s) Details


Os.36593.2.S1_at

Description gb:NM_183568.1
DB_XREF= gi:34894263
TID=Os.36593.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g184008/1126 kDa endochitinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein
LOC_Os01g18400Os.36593.1.S1_at11/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_x_at10/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_at8/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18410Os.9858.2.S1_x_at11/111+10343489..10346650hypothetical protein
LOC_Os01g18410Os.9858.1.S1_at3/111+10343489..10346650hypothetical protein
LOC_Os01g18420OsAffx.11096.1.S1_at11/111+10349207..10349929SRF-type transcription factor family protein
LOC_Os01g18440OsAffx.11097.1.S1_at11/111+10363189..10364109SRF-type transcription factor family protein

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Gene Ontology Classification
GO idTypeName
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36593.2.S1_at--301--571NONE
ATCCAAATCTCATGTCACCAACGTA
NONE
Os.36593.2.S1_at--49--9211NONE
TCCAAATCTCATGTCACCAACGTAA
NONE
Os.36593.2.S1_at--794--4371NONE
CCAAATCTCATGTCACCAACGTAAT
NONE
Os.36593.2.S1_at--322--2271Chr01:10339340..10339821 (25 bp)
AAATCTCATGTCACCAACGTAATGT
LOC_Os01g18400
Os.36593.2.S1_at--157--3031Chr01:10339339..10339820 (25 bp)
AATCTCATGTCACCAACGTAATGTA
LOC_Os01g18400
Os.36593.2.S1_at--637--451Chr01:10339338..10339819 (25 bp)
ATCTCATGTCACCAACGTAATGTAT
LOC_Os01g18400
Os.36593.2.S1_at--159--9531Chr01:10339337..10339818 (25 bp)
TCTCATGTCACCAACGTAATGTATG
LOC_Os01g18400
Os.36593.2.S1_at--171--9631Chr01:10339335..10339355 (21 bp)
TCATGTCACCAACGTAATGTATGCA
LOC_Os01g18400
Os.36593.2.S1_at--448--3511Chr01:10339334..10339355 (22 bp)
CATGTCACCAACGTAATGTATGCAT
LOC_Os01g18400
Os.36593.2.S1_at--605--751Chr01:10339333..10339355 (23 bp)
ATGTCACCAACGTAATGTATGCATG
LOC_Os01g18400
Os.36593.2.S1_at--479--7111Chr01:10339331..10339355 (25 bp)
GTCACCAACGTAATGTATGCATGAT
LOC_Os01g18400
Target Sequence 
ATCCAAATCTCATGTCACCAACGTAATGTATGCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36593.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis