Browse Element(s) Details


Os.36897.1.A1_at

Description gb:AK062415.1
DB_XREF= gi:32972433
TID=Os.36897.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F06, full insert sequence.
FL= gb:AK062415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0555011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05520Os.49830.1.S1_at11/118+2942209..2945028Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g05530Os.25436.1.S1_at11/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05530OsAffx.16839.1.S1_s_at9/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05540OsAffx.5717.1.S1_at11/118+2962018..2962695expressed protein
LOC_Os08g05550Os.36897.1.A1_at11/118+2962962..2965420hypothetical protein
LOC_Os08g05560Os.53532.1.S1_at11/118+2966257..2970070Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g05570Os.10774.1.S1_at10/118+2971047..2975917Monodehydroascorbate reductase, chloroplast precursor, putative, expressed
LOC_Os08g05580OsAffx.16840.1.S1_at11/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05580OsAffx.17990.1.S1_at1/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05590OsAffx.29048.1.S1_at11/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_at2/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_x_at1/118+2981082..2984672aquaporin NIP5.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36897.1.A1_at--247--1471Chr08:2964976..2965000 (25 bp)
AGAAGGTTGGTACTCCGACGATGAT
LOC_Os08g05550
Os.36897.1.A1_at--986--671Chr08:2964999..2965023 (25 bp)
ATGACGGGCAACTCACATGGTTCAA
LOC_Os08g05550
Os.36897.1.A1_at--118--6611Chr08:2965073..2965097 (25 bp)
GTTGGTATAGGTGTTGGCCTCCTCA
LOC_Os08g05550
Os.36897.1.A1_at--571--5911Chr08:2965099..2965123 (25 bp)
GAGCTCATACCAAGCAACAGCCAGA
LOC_Os08g05550
Os.36897.1.A1_at--293--5351Chr08:2965129..2965153 (25 bp)
GAAGAGGCGATTCTTCTAACGCCGT
LOC_Os08g05550
Os.36897.1.A1_at--779--1811Chr08:2965147..2965171 (25 bp)
ACGCCGTTGCGTTGAATACACAAAC
LOC_Os08g05550
Os.36897.1.A1_at--326--2191Chr08:2965166..2965190 (25 bp)
ACAAACTTTTGATGGCCGGTAGCAG
LOC_Os08g05550
Os.36897.1.A1_at--856--7411Chr08:2965273..2965297 (25 bp)
GTGTTGCTTTTGCTTGTGCAGTTTT
LOC_Os08g05550
Os.36897.1.A1_at--725--7331Chr08:2965288..2965312 (25 bp)
GTGCAGTTTTTGAGCCCCTGTGCAT
LOC_Os08g05550
Os.36897.1.A1_at--892--9051Chr08:2965308..2965332 (25 bp)
TGCATCCCTCTCAGTTCTATGTGAA
LOC_Os08g05550
Os.36897.1.A1_at--1146--771Chr08:2965326..2965350 (25 bp)
ATGTGAACTGTGAATGTCCTCTGAC
LOC_Os08g05550
Target Sequence 
AGAAGGTTGGTACTCCGACGATGATGACGGGCAACTCACATGGTTCAATGCTGGTGTTAGAGTTGGTGTTGGGATTGGCC
TGGGAGTTTGTGTGGGTGTTGGTATAGGTGTTGGCCTCCTCATGAGCTCATACCAAGCAACAGCCAGAAGCCTGAAGAGG
CGATTCTTCTAACGCCGTTGCGTTGAATACACAAACTTTTGATGGCCGGTAGCAGTATAGAGTTGGTTTGGTTCTGTTTC
AAAGGGCAGAAATATCATTGTATAGTTGGTGGATGTGTTGTTTATGTGTGAGGTGTTGTGTTGCTTTTGCTTGTGCAGTT
TTTGAGCCCCTGTGCATCCCTCTCAGTTCTATGTGAACTGTGAATGTCCTCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36897.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis