Browse Element(s) Details


Os.37093.1.S1_at

Description gb:AK060710.1
DB_XREF= gi:32970728
TID=Os.37093.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A12, full insert sequence.
FL= gb:AK060710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1134011/11cytochrome P450 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11300Os.43516.1.S1_at11/111+6054242..6055831cytochrome P450 family protein, putative, expressed
LOC_Os01g11300Os.48011.1.S1_x_at2/111+6054242..6055831cytochrome P450 family protein, putative, expressed
LOC_Os01g11310OsAffx.9930.1.S1_at8/111+6060281..6060736transposon protein, putative, Pong sub-class
LOC_Os01g11320NANA1+6062485..6063280transposon protein, putative, Pong sub-class
LOC_Os01g11330OsAffx.26503.1.S1_at1/111+6065600..6068538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g11340Os.37093.1.S1_at11/111+6073533..6075417cytochrome P450 family protein, putative, expressed
LOC_Os01g11340Os.48011.1.S1_x_at3/111+6073533..6075417cytochrome P450 family protein, putative, expressed
LOC_Os01g11350Os.33336.1.S1_at11/111+6091494..6093330bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37093.1.S1_at--1057--1771Chr01:6073911..6073935 (25 bp)
ACCGTGTACCTCAAGCAGCGATGCG
LOC_Os01g11340
Os.37093.1.S1_at--359--611Chr01:6073891..6073915 (25 bp)
ATGCGCCAAGTTCCCATCTTTCTGA
LOC_Os01g11340
Os.37093.1.S1_at--570--9551Chr01:6073875..6073899 (25 bp)
TCTTTCTGAGCTGGTTTCCCTTGTC
LOC_Os01g11340
Os.37093.1.S1_at--398--4251Chr01:6073830..6073854 (25 bp)
CCGTGCATCGCATAATTTTTCTTCT
LOC_Os01g11340
Os.37093.1.S1_at--420--10331Chr01:6073792..6073816 (25 bp)
TTTCAATCTGGTGGATCGTGTCGCA
LOC_Os01g11340
Os.37093.1.S1_at--151--9431Chr01:6073777..6073801 (25 bp)
TCGTGTCGCAGCTGTGATGCATTGT
LOC_Os01g11340
Os.37093.1.S1_at--263--6931Chr01:6073746..6073770 (25 bp)
GTAGGTTTTGATGTTTGGTCCATTC
LOC_Os01g11340
Os.37093.1.S1_at--27--6871Chr01:6073688..6073712 (25 bp)
GTTTGGACTCAGCTTTGGGTCCCAG
LOC_Os01g11340
Os.37093.1.S1_at--381--9571Chr01:6073608..6073632 (25 bp)
TCTTCTGGTTTGGTTGGTTGGCATG
LOC_Os01g11340
Os.37093.1.S1_at--142--6631Chr01:6073596..6073620 (25 bp)
GTTGGTTGGCATGTCTCAGGAAATT
LOC_Os01g11340
Os.37093.1.S1_at--449--2971Chr01:6073559..6073583 (25 bp)
AATGGATTTGCTCGATTGTTTTGGC
LOC_Os01g11340
Target Sequence 
ACCGTGTACCTCAAGCAGCGATGCGCCAAGTTCCCATCTTTCTGAGCTGGTTTCCCTTGTCCTCTTGCTCTGCTCCTCTT
CCCGTGCATCGCATAATTTTTCTTCTTCTCCATTTTTCTTTTCAATCTGGTGGATCGTGTCGCAGCTGTGATGCATTGTT
GATTTGTAGGTTTTGATGTTTGGTCCATTCAATTATTTTTGTTGGTAATTGGGTTCAGTTGGGGTTTGGACTCAGCTTTG
GGTCCCAGCCGGCTAGGGGATGATACGAACACTACATCTGGGGTTGTTGGCCACATGTGTGGGTCTTCTGGTTTGGTTGG
TTGGCATGTCTCAGGAAATTGGTGGTATTTGGAATGGATTTGCTCGATTGTTTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis