Browse Element(s) Details


Os.33336.1.S1_at

Description gb:AK100944.1
DB_XREF= gi:32986153
TID=Os.33336.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138F18, full insert sequence.
FL= gb:AK100944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1135011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11330OsAffx.26503.1.S1_at1/111+6065600..6068538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g11340Os.37093.1.S1_at11/111+6073533..6075417cytochrome P450 family protein, putative, expressed
LOC_Os01g11340Os.48011.1.S1_x_at3/111+6073533..6075417cytochrome P450 family protein, putative, expressed
LOC_Os01g11350Os.33336.1.S1_at11/111+6091494..6093330bZIP transcription factor family protein, expressed
LOC_Os01g11360OsAffx.11007.1.S1_at9/111+6105760..6108119hypothetical protein
LOC_Os01g11370Os.43507.1.A1_x_at11/111+6109613..6122311Helicase associated domain family protein, expressed
LOC_Os01g11370Os.50431.1.S1_at1/111+6109613..6122311Helicase associated domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33336.1.S1_at--226--6031Chr01:6092059..6092083 (25 bp)
GAGAGGCTGCGGCAAATCTACCACC
LOC_Os01g11350
Os.33336.1.S1_at--165--2351Chr01:6092031..6092055 (25 bp)
AAAGCCTCAAGAACGCGGAATCCCA
LOC_Os01g11350
Os.33336.1.S1_at--827--5791Chr01:6091898..6091922 (25 bp)
GACGCTCTCTAGACCTCTAGCGAGG
LOC_Os01g11350
Os.33336.1.S1_at--33--4171Chr01:6091822..6091846 (25 bp)
CGCCGTGTTAGGATTGGTGCATTGT
LOC_Os01g11350
Os.33336.1.S1_at--622--9751Chr01:6091797..6091821 (25 bp)
TAATTTGGGTTTTGCATTCTTTGGG
LOC_Os01g11350
Os.33336.1.S1_at--173--8791Chr01:6091754..6091778 (25 bp)
TGTTCATTCGGGTTGCTTTTGTTCA
LOC_Os01g11350
Os.33336.1.S1_at--247--10411Chr01:6091738..6091762 (25 bp)
TTTTGTTCATTCTTGTGCATCCTCT
LOC_Os01g11350
Os.33336.1.S1_at--613--9571Chr01:6091680..6091704 (25 bp)
TCTTCTCTACTTCCCTGATTTGTAA
LOC_Os01g11350
Os.33336.1.S1_at--1003--8731Chr01:6091660..6091684 (25 bp)
TGTAATTTTATTCCGGCATTTTGGG
LOC_Os01g11350
Os.33336.1.S1_at--675--10391Chr01:6091515..6091539 (25 bp)
TTTTCCTGTATGATCCACTGTATGT
LOC_Os01g11350
Os.33336.1.S1_at--93--6931Chr01:6091496..6091520 (25 bp)
GTATGTATTTACAGCTATCCATCAG
LOC_Os01g11350
Target Sequence 
GAGAGGCTGCGGCAAATCTACCACCAGCAAAGCCTCAAGAACGCGGAATCCCAACCGGCGGACGCGGCCCCGGTCCGCGG
CCGCGACAATGCCGACCTGATCGGCAGCGAGGGGGCCGCCGCGGCCGCGCCATGCCCGCACTCGTGATCGGCCGAGATCC
GGACGCTCTCTAGACCTCTAGCGAGGTGGCGCCGGCCCGTCGCGACAACCACGAGCGTTGCCGCGGGGGTGGGCCGGCGC
CGTGTTAGGATTGGTGCATTGTTAATTTGGGTTTTGCATTCTTTGGGGTGTAATGTAACATGATTTGTTCATTCGGGTTG
CTTTTGTTCATTCTTGTGCATCCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTGATTCTTCTCTACTTCCCTGATTT
GTAATTTTATTCCGGCATTTTGGGCGAAGGTTGTAGCTAAGAATTGTAATTCAGATTGGGTGAGGTCAAGTGTTTTGTTT
GGCTGGTTTTTTTTTCTCTTTTTCTTTTTTGTATCTGATAAAATCAAATGTAATGTTCCTTCATTTTTCCTGTATGATCC
ACTGTATGTATTTACAGCTATCCATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis