Browse Element(s) Details


Os.43507.1.A1_x_at

Description gb:CB629825
DB_XREF= gi:29624814
DB_XREF=OSIIEb06F19.r
CLONE=OSIIEb06F19
TID=Os.43507.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.43507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1137011/11Helicase associated domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11350Os.33336.1.S1_at11/111+6091494..6093330bZIP transcription factor family protein, expressed
LOC_Os01g11360OsAffx.11007.1.S1_at9/111+6105760..6108119hypothetical protein
LOC_Os01g11370Os.43507.1.A1_x_at11/111+6109613..6122311Helicase associated domain family protein, expressed
LOC_Os01g11370Os.50431.1.S1_at1/111+6109613..6122311Helicase associated domain family protein, expressed
LOC_Os01g11390OsAffx.22116.1.S1_x_at1/111+6126132..6126539hypothetical protein
LOC_Os01g11400NANA1+6129092..6129921hypothetical protein
LOC_Os01g11414Os.3917.1.S1_s_at11/111+6131005..6135960Sodium/calcium exchanger protein, expressed
LOC_Os01g11414Os.3917.2.S1_x_at11/111+6131005..6135960Sodium/calcium exchanger protein, expressed
LOC_Os01g11430Os.50336.1.S1_x_at11/111+6136384..6138446expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43507.1.A1_x_at--268--131Chr01:6121565..6121589 (25 bp)
ATTCATCCTTCTTCTGTGCTATTTA
LOC_Os01g11370
Os.43507.1.A1_x_at--64--7131Chr01:6121700..6121724 (25 bp)
GTCATCTACCAGTCTCTAGTTTCAA
LOC_Os01g11370
Os.43507.1.A1_x_at--1008--851Chr01:6121768..6121792 (25 bp)
ATGGCTTACGGAAGCTGCACCACAT
LOC_Os01g11370
Os.43507.1.A1_x_at--889--10351Chr01:6121792..6121816 (25 bp)
TTTTTATCAGTTCCGGACACCCAAT
LOC_Os01g11370
Os.43507.1.A1_x_at--804--9251Chr01:6121816..6121840 (25 bp)
TCCTGCCCTTCACTAACTATATGAT
LOC_Os01g11370
Os.43507.1.A1_x_at--396--3251Chr01:6121932..6121956 (25 bp)
CAACTTGATCTTTGCACCTTTTTGC
LOC_Os01g11370
Os.43507.1.A1_x_at--113--6251Chr01:6121995..6122019 (25 bp)
GATGGAGTTTCACCACTTTTAGCAC
LOC_Os01g11370
Os.43507.1.A1_x_at--161--8011Chr01:6122034..6122058 (25 bp)
GGATGGTTTGCACTTTTAGCACTTT
LOC_Os01g11370
Os.43507.1.A1_x_at--653--1051Chr01:6122061..6122085 (25 bp)
AGGGTAGCTGCTTTCGTGTTAATCT
LOC_Os01g11370
Os.43507.1.A1_x_at--977--3811Chr01:6122160..6122184 (25 bp)
CTGCCATAGCTTTATATCCTTCCTA
LOC_Os01g11370
Os.43507.1.A1_x_at--659--9251Chr01:6122180..6122204 (25 bp)
TCCTATTCCTATATTGCTGCAGTGT
LOC_Os01g11370
Target Sequence 
ATTCATCCTTCTTCTGTGCTATTTAGGGTTAATCCAAAGTGGGTCATCTACCAGTCTCTAGTTTCAACTGATAAGCACTA
TATGCGTAATGTTATTGCCATTGAACCATCATGGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATC
CTGCCCTTCACTAACTATATGATGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTA
CTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTA
AGGGTAGCTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTA
CTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43507.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis