Browse Element(s) Details


Os.3917.1.S1_s_at

Description gb:AK066468.1
DB_XREF= gi:32976486
TID=Os.3917.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066B01, full insert sequence.
FL= gb:AK066468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1141411/11Sodium/calcium exchanger protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11360OsAffx.11007.1.S1_at9/111+6105760..6108119hypothetical protein
LOC_Os01g11370Os.43507.1.A1_x_at11/111+6109613..6122311Helicase associated domain family protein, expressed
LOC_Os01g11370Os.50431.1.S1_at1/111+6109613..6122311Helicase associated domain family protein, expressed
LOC_Os01g11390OsAffx.22116.1.S1_x_at1/111+6126132..6126539hypothetical protein
LOC_Os01g11400NANA1+6129092..6129921hypothetical protein
LOC_Os01g11414Os.3917.1.S1_s_at11/111+6131005..6135960Sodium/calcium exchanger protein, expressed
LOC_Os01g11414Os.3917.2.S1_x_at11/111+6131005..6135960Sodium/calcium exchanger protein, expressed
LOC_Os01g11430Os.50336.1.S1_x_at11/111+6136384..6138446expressed protein
LOC_Os01g11450OsAffx.19542.3.S1_x_at3/111+6159989..6163187retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3917.1.S1_s_at--619--6411Chr01:6135786..6135810 (25 bp)
GATCTTGTAAATTTATCTCCCTGTA
LOC_Os01g11414
Os.3917.1.S1_s_at--1159--411Chr01:6135787..6135811 (25 bp)
ATCTTGTAAATTTATCTCCCTGTAA
LOC_Os01g11414
Os.3917.1.S1_s_at--78--9591Chr01:6135788..6135812 (25 bp)
TCTTGTAAATTTATCTCCCTGTAAT
LOC_Os01g11414
Os.3917.1.S1_s_at--877--3611Chr01:6135789..6135813 (25 bp)
CTTGTAAATTTATCTCCCTGTAATT
LOC_Os01g11414
Os.3917.1.S1_s_at--820--7171Chr01:6135819..6135843 (25 bp)
GTCTGCACTTCACGCTGTGCATTGT
LOC_Os01g11414
Os.3917.1.S1_s_at--972--9471Chr01:6135820..6135844 (25 bp)
TCTGCACTTCACGCTGTGCATTGTA
LOC_Os01g11414
Os.3917.1.S1_s_at--420--3851Chr01:6135821..6135845 (25 bp)
CTGCACTTCACGCTGTGCATTGTAA
LOC_Os01g11414
Os.3917.1.S1_s_at--538--9031Chr01:6135822..6135846 (25 bp)
TGCACTTCACGCTGTGCATTGTAAC
LOC_Os01g11414
Os.3917.1.S1_s_at--378--5111Chr01:6135823..6135847 (25 bp)
GCACTTCACGCTGTGCATTGTAACT
LOC_Os01g11414
Os.3917.1.S1_s_at--951--5491Chr01:6135894..6135918 (25 bp)
GAACAGAGATGAGCATAATATATAA
LOC_Os01g11414
Os.3917.1.S1_s_at--11--2151Chr01:6135896..6135920 (25 bp)
ACAGAGATGAGCATAATATATAAAT
LOC_Os01g11414
Target Sequence 
GATCTTGTAAATTTATCTCCCTGTAATTTATCTGTCTGCACTTCACGCTGTGCATTGTAACTTGTGCCTATCCTAAGGTT
CCCATTTGTTCTAGTTTATCCTGATCTTGAACAGAGATGAGCATAATATATAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3917.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis