Browse Element(s) Details


Os.3710.1.S1_at

Description gb:AB045120.1
DB_XREF= gi:8698832
GEN=EL5
TID=Os.3710.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EL5 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) EL5 mRNA, complete cds.
FL= gb:AB045120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3532910/11E3 ubiquitin ligase EL5, putative, expressed
LOC_Os02g353474/11Zinc finger, C3HC4 type family protein
LOC_Os02g354014/11Zinc finger, C3HC4 type family protein
LOC_Os02g353654/11Zinc finger, C3HC4 type family protein
LOC_Os02g353834/11Zinc finger, C3HC4 type family protein
LOC_Os02g354294/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35300Os.50441.1.S1_at11/112+21219175..21222839transposon protein, putative, unclassified, expressed
LOC_Os02g35300Os.50441.2.S1_x_at11/112+21219175..21222839transposon protein, putative, unclassified, expressed
LOC_Os02g35310Os.48606.1.S1_at11/112+21223097..2122548212-oxophytodienoate reductase 1, putative, expressed
LOC_Os02g35320OsAffx.12359.1.S1_at9/112+21237383..21240741FAD binding domain containing protein, expressed
LOC_Os02g35329Os.3710.1.S1_at10/112+21244258..21245455E3 ubiquitin ligase EL5, putative, expressed
LOC_Os02g35338OsAffx.12359.1.S1_at9/112+21247879..21249767monooxygenase, putative
LOC_Os02g35338Os.51501.1.S2_x_at1/112+21247879..21249767monooxygenase, putative
LOC_Os02g35338Os.51501.1.S2_at1/112+21247879..21249767monooxygenase, putative
LOC_Os02g35347Os.3710.1.S1_at4/112+21253494..21254438Zinc finger, C3HC4 type family protein
LOC_Os02g35356OsAffx.12359.1.S1_at9/112+21256905..21258793monooxygenase, putative
LOC_Os02g35356Os.51501.1.S2_x_at1/112+21256905..21258793monooxygenase, putative
LOC_Os02g35356Os.51501.1.S2_at1/112+21256905..21258793monooxygenase, putative
LOC_Os02g35365Os.3710.1.S1_at4/112+21262520..21263464Zinc finger, C3HC4 type family protein
LOC_Os02g35374OsAffx.12359.1.S1_at9/112+21265931..21267819monooxygenase, putative
LOC_Os02g35374Os.51501.1.S2_at1/112+21265931..21267819monooxygenase, putative
LOC_Os02g35374Os.51501.1.S2_x_at1/112+21265931..21267819monooxygenase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0006952biological_processdefense response
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3710.1.S1_at--684--1736Chr02:21289901..21289925 (25 bp)
ACCATGACAGCGGAGGGCCGCAGCA
LOC_Os02g35429
Os.3710.1.S1_at--771--5057Chr02:21289882..21289906 (25 bp)
GCAGCACGCTGGTGATCGAGATCCC
LOC_Os02g35429
Os.3710.1.S1_at--265--3877Chr02:21297991..21298015 (25 bp)
CTGAGGTCACTGAGAAGGCTCTGGA
NONE
Os.3710.1.S1_at--233--1916Chr02:21289693..21289717 (25 bp)
ACGTCGAGCACGGTGTCAGCGTCAC
LOC_Os02g35429
Os.3710.1.S1_at--122--8396Chr02:21289570..21289594 (25 bp)
GGCGAGGTCGTCAAGTATTATAAGG
NONE
Os.3710.1.S1_at--910--6876Chr02:21289556..21289580 (25 bp)
GTATTATAAGGCGATCTCCCTGTAC
NONE
Os.3710.1.S1_at--557--6416Chr02:21289544..21289568 (25 bp)
GATCTCCCTGTACATATCGGTAGAA
NONE
Os.3710.1.S1_at--537--6496Chr02:21289525..21289549 (25 bp)
GTAGAACCGAACTGGAATCGCCATT
NONE
Os.3710.1.S1_at--628--8216Chr02:21289512..21289536 (25 bp)
GGAATCGCCATTAATTCCTACGATT
NONE
Os.3710.1.S1_at--963--6236Chr02:21289399..21289423 (25 bp)
GATGGCAGTGAGAAGCATCCCTCTC
NONE
Os.3710.1.S1_at--562--3536Chr02:21289388..21289408 (21 bp)
CATCCCTCTCCGTATGTTCCAAAAA
NONE
Target Sequence 
ACCATGACAGCGGAGGGCCGCAGCACGCTGGTGATCGAGATCCCCGAATCCGCGGCTTCGACGACCCCGCGCGACGCGGC
GGCGAGGTCGTCGCCGAGCTTGGCGCGGCTGAGGTCACTGAGAAGGCTCTGGAGCTTCGGGCGGCAAGGGGCGGCGGGGT
CGACGTCGTCATGCTCCTGCGCCACCGGAGGAGACAACGACGACGGCGACGTCGAGCACGGTGTCAGCGTCACCGTCGCC
ATCCGCGCCGTGGAGGCGGCAACGCCGGCACGGCCACCGGAGGCCGAGGCCGGTGCAAGAACCGCCGCCGCGCATGTCCG
GAATTGACGGCGGCGAGGTCGTCAAGTATTATAAGGCGATCTCCCTGTACATATCGGTAGAACCGAACTGGAATCGCCAT
TAATTCCTACGATTTTAGAAAATATCAATTTCATTTTTAAGATTAGAAACATTTAAGTAGAAATTATTTGTTCATCAGTC
AAGTAGCAAAGAGAAATGTATGGATGGCAGTGAGAAGCATCCCTCTCCGTATGTTCCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis