Browse Element(s) Details


Os.37113.1.S1_at

Description gb:AK060644.1
DB_XREF= gi:32970662
TID=Os.37113.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088C09.19 (B1088C09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G02, full insert sequence.
FL= gb:AK060644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6133011/11MSP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61290OsAffx.11684.1.S1_at11/111+35785652..35786286hypothetical protein
LOC_Os01g61300NANA1+35793265..35793663hypothetical protein
LOC_Os01g61310OsAffx.23881.1.S1_x_at11/111+35800544..35801182hypothetical protein
LOC_Os01g61320Os.8865.4.S1_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.4.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.2.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61330Os.37113.1.S1_at11/111+35806920..35809034MSP domain containing protein, expressed
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37113.1.S1_at--610--1731Chr01:35807415..35807439 (25 bp)
ACCTTGCTGCCATCAAAGGGCACTG
LOC_Os01g61330
Os.37113.1.S1_at--804--4251Chr01:35807370..35807394 (25 bp)
CCGGGTCAGGCTGCATGGACATCGA
LOC_Os01g61330
Os.37113.1.S1_at--1121--4511Chr01:35807222..35807246 (25 bp)
GCCGCTCCAGATGGCCGTGACGATG
LOC_Os01g61330
Os.37113.1.S1_at--580--10671Chr01:35807114..35807138 (25 bp)
TTCCTCCTCGATATCGTGTGCGTAG
LOC_Os01g61330
Os.37113.1.S1_at--256--9431Chr01:35807101..35807125 (25 bp)
TCGTGTGCGTAGATTCGTTGTGTCC
LOC_Os01g61330
Os.37113.1.S1_at--594--6631Chr01:35807085..35807109 (25 bp)
GTTGTGTCCACTGCTCAATCCAGAG
LOC_Os01g61330
Os.37113.1.S1_at--914--4831Chr01:35807073..35807097 (25 bp)
GCTCAATCCAGAGTTGTTGTTTATA
LOC_Os01g61330
Os.37113.1.S1_at--1008--6971Chr01:35807037..35807061 (25 bp)
GTACCAGGAGTCTAGGTGACAGTAT
LOC_Os01g61330
Os.37113.1.S1_at--772--1331Chr01:35806987..35807011 (25 bp)
AGAGGTGATTGTTCTGTTTTTGTCA
LOC_Os01g61330
Os.37113.1.S1_at--209--5271Chr01:35806941..35806965 (25 bp)
GAATGTTTGCATCGGATTCCTTTCT
LOC_Os01g61330
Os.37113.1.S1_at--21--7931Chr01:35806928..35806952 (25 bp)
GGATTCCTTTCTTTATAGTTCGATA
LOC_Os01g61330
Target Sequence 
ACCTTGCTGCCATCAAAGGGCACTGCGACGTGATCGCGCTGCTCGCCGGGTCAGGCTGCATGGACATCGAGTGCGAGGAC
GTGGAAGGGCACCGCCCGCTGCACCTCGCCGTCGAAGGCGGCAGCGCCGAGGCCGTCGAGCTGCTGCTCGACATGGGCGC
CGAAGTGCACGCCGCCACCAGGCGGGGCGCGACGCCGCTCCAGATGGCCGTGACGATGGGGTACGAGGCCATCGCGCTGC
TGCTGCGAGGCCGTGGCGCCGACGAGGCGGCCGCGCCGGCGTTGTGCATCGCGTCCTCGTCTTCCTCCTCGATATCGTGT
GCGTAGATTCGTTGTGTCCACTGCTCAATCCAGAGTTGTTGTTTATACTTTGTAATTTGTACCAGGAGTCTAGGTGACAG
TATTGTACTGTATAGTTTTATAGTTTACAGAGGTGATTGTTCTGTTTTTGTCAGTAACTCTTGTTAAGCAAAGTGAATGT
TTGCATCGGATTCCTTTCTTTATAGTTCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis