Browse Element(s) Details


OsAffx.11684.1.S1_at

Description tigr:9629.m06033
TID=OsAffx.11684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6129011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61240OsAffx.11683.1.S1_at10/111+35760750..35762644Gamma interferon inducible lysosomal thiol reductase family protein
LOC_Os01g61250Os.23688.1.A1_x_at11/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61250Os.42520.1.A1_x_at8/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61260NANA1+35769811..35770761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_at2/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_x_at1/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61290OsAffx.11684.1.S1_at11/111+35785652..35786286hypothetical protein
LOC_Os01g61300NANA1+35793265..35793663hypothetical protein
LOC_Os01g61310OsAffx.23881.1.S1_x_at11/111+35800544..35801182hypothetical protein
LOC_Os01g61320Os.8865.4.S1_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.4.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.2.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61330Os.37113.1.S1_at11/111+35806920..35809034MSP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11684.1.S1_at--965--9131Chr01:35786222..35786246 (25 bp)
TGCGGTCAAAGCGTGGGCTCATGTT
LOC_Os01g61290
OsAffx.11684.1.S1_at--917--2071Chr01:35786174..35786198 (25 bp)
ACATTGCTTCCCCATCTTTGTCGAA
LOC_Os01g61290
OsAffx.11684.1.S1_at--421--10791Chr01:35786157..35786181 (25 bp)
TTGTCGAACCTCTTCCACTGTTGGG
LOC_Os01g61290
OsAffx.11684.1.S1_at--572--1931Chr01:35786141..35786165 (25 bp)
ACTGTTGGGCCTCACCAATGCCCAG
LOC_Os01g61290
OsAffx.11684.1.S1_at--943--1711Chr01:35786108..35786132 (25 bp)
ACCAGTTTGCCTCCCATTGTGAGTA
LOC_Os01g61290
OsAffx.11684.1.S1_at--1005--31Chr01:35786093..35786117 (25 bp)
ATTGTGAGTATCTCCGCACTCAACA
LOC_Os01g61290
OsAffx.11684.1.S1_at--72--2011Chr01:35786076..35786100 (25 bp)
ACTCAACACCGTCGTCTTAAATGTC
LOC_Os01g61290
OsAffx.11684.1.S1_at--196--9551Chr01:35786062..35786086 (25 bp)
TCTTAAATGTCACGTAGGCCTACCC
LOC_Os01g61290
OsAffx.11684.1.S1_at--312--7192Chr06:26152458..26152479 (22 bp)
GTCGGCGTATGGGTCACCGTCAATG
NONE
OsAffx.11684.1.S1_at--1033--2951Chr01:35785995..35786019 (25 bp)
AATGGCCACTTCAAGCTTCCAGTCA
LOC_Os01g61290
OsAffx.11684.1.S1_at--696--9711Chr01:35785985..35786009 (25 bp)
TCAAGCTTCCAGTCACCAAGCACTT
LOC_Os01g61290
Target Sequence 
TGCGGTCAAAGCGTGGGCTCATGTTCTACTCCCACCATCTCCTCAACTACATTGCTTCCCCATCTTTGTCGAACCTCTTC
CACTGTTGGGCCTCACCAATGCCCAGCGACACCGACCAGTTTGCCTCCCATTGTGAGTATCTCCGCACTCAACACCGTCG
TCTTAAATGTCACGTAGGCCTACCCGACACCACCCGCATGGCCTCCGTCGGCGTATGGGTCACCGTCAATGGCCACTTCA
AGCTTCCAGTCACCAAGCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis