Browse Element(s) Details


Os.42520.1.A1_x_at

Description gb:CA760272
DB_XREF= gi:25804311
DB_XREF=BR060006B10H03.ab1
CLONE=BR060006B10H03.ab1
TID=Os.42520.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088C09.12 (B1088C09.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g612508/11dehydration-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61190Os.14101.2.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.1.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61200Os.14101.3.S1_at11/111+35742555..35744023GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61210OsAffx.21770.1.S1_at11/111+35747882..35748508Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os01g61220NANA1+35754317..35754886hypothetical protein
LOC_Os01g61230Os.42521.1.S1_at10/111+35757730..35759729NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g61240OsAffx.11683.1.S1_at10/111+35760750..35762644Gamma interferon inducible lysosomal thiol reductase family protein
LOC_Os01g61250Os.23688.1.A1_x_at11/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61250Os.42520.1.A1_x_at8/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61260NANA1+35769811..35770761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_at2/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_x_at1/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61290OsAffx.11684.1.S1_at11/111+35785652..35786286hypothetical protein
LOC_Os01g61300NANA1+35793265..35793663hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42520.1.A1_x_at--526--8771Chr01:35767883..35767907 (25 bp)
TCTTTTAATACATATCCCCGGACCT
LOC_Os01g61250
Os.42520.1.A1_x_at--162--4251Chr01:35767900..35767924 (25 bp)
CCGGACCTATGATCTTGTTCACATG
LOC_Os01g61250
Os.42520.1.A1_x_at--867--6751Chr01:35767916..35767940 (25 bp)
GTTCACATGAGTTATCTCCTTCAGG
LOC_Os01g61250
Os.42520.1.A1_x_at--485--10631Chr01:35768172..35768196 (25 bp)
TTCGCTCTTTGCACTACAGGACTGC
LOC_Os01g61250
Os.42520.1.A1_x_at--226--5391Chr01:35768203..35768227 (25 bp)
GAAGCAACAATTTCTTGTCGCTACA
LOC_Os01g61250
Os.42520.1.A1_x_at--261--1311NONE
AGATGATTCATGCTTCGTCTTCAGT
NONE
Os.42520.1.A1_x_at--1084--4951NONE
GCATAGATGACCCAAATTAGCCCCA
NONE
Os.42520.1.A1_x_at--1131--131Chr01:35768374..35768398 (25 bp)
ATTAGCCCCATATCAACGGTGAGTT
LOC_Os01g61250
Os.42520.1.A1_x_at--197--1231Chr01:35768395..35768419 (25 bp)
AGTTCATTCCCTCTGTTTGTAGTTA
LOC_Os01g61250
Os.42520.1.A1_x_at--216--5031NONE
GCAGTCCATATTAACCATCAGGCTT
NONE
Os.42520.1.A1_x_at--312--8831Chr01:35768452..35768476 (25 bp)
TGATTCTTTTGTTTCCGTTTTGTTG
LOC_Os01g61250
Target Sequence 
TCTTTTAATACATATCCCCGGACCTATGATCTTGTTCACATGAGTTATCTCCTTCAGGGCCTCACAAATAGGTGTGATAT
CATTGAAGTAGCAGCAGAAATTGATAGGATACTTAGACCTGGAAAATGGTTCGTGTTGCAAGATACTGAGCAAGTGATTA
GAAAAATGGATCCAGTTNTTCGCTCTTTGCACTACAGGACTGCAATTGTGAAGCAACAATTTCTTGTCGCTACAAAGGGC
TTNTGGCGCCCANACAGTGCAGGTTNTGAGTCAAGATGATTCATGCTTCGTCTTCAGTTTCTGTTAGTAAAAATCAAACA
ACTGATTTGATTCTTTAAATTCTAGTTACATGGATTTTTCGCATAGCATAGATGACCCAAATTAGCCCCATATCAACGGT
GAGTTCATTCCCTCTGTTTGTAGTTAGCAGTCCATATTAACCATCAGGCTTACTGAGTTGATTCTTTTGTTTCCGTTTTG
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42520.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis