Browse Element(s) Details


Os.23688.1.A1_x_at

Description gb:AK069906.1
DB_XREF= gi:32979930
TID=Os.23688.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034H23, full insert sequence.
FL= gb:AK069906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6125011/11dehydration-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61190Os.14101.2.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.1.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61200Os.14101.3.S1_at11/111+35742555..35744023GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61210OsAffx.21770.1.S1_at11/111+35747882..35748508Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os01g61220NANA1+35754317..35754886hypothetical protein
LOC_Os01g61230Os.42521.1.S1_at10/111+35757730..35759729NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g61240OsAffx.11683.1.S1_at10/111+35760750..35762644Gamma interferon inducible lysosomal thiol reductase family protein
LOC_Os01g61250Os.23688.1.A1_x_at11/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61250Os.42520.1.A1_x_at8/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61260NANA1+35769811..35770761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_at2/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_x_at1/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61290OsAffx.11684.1.S1_at11/111+35785652..35786286hypothetical protein
LOC_Os01g61300NANA1+35793265..35793663hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23688.1.A1_x_at--525--8771Chr01:35767883..35767907 (25 bp)
TCTTTTAATACATATCCCCGGACCT
LOC_Os01g61250
Os.23688.1.A1_x_at--163--4251Chr01:35767900..35767924 (25 bp)
CCGGACCTATGATCTTGTTCACATG
LOC_Os01g61250
Os.23688.1.A1_x_at--866--6751Chr01:35767916..35767940 (25 bp)
GTTCACATGAGTTATCTCCTTCAGG
LOC_Os01g61250
Os.23688.1.A1_x_at--17--2451Chr01:35768156..35768180 (25 bp)
AAAATGGATCCAGTTCTTCGCTCTT
LOC_Os01g61250
Os.23688.1.A1_x_at--867--3631Chr01:35768171..35768195 (25 bp)
CTTCGCTCTTTGCACTACAGGACTG
LOC_Os01g61250
Os.23688.1.A1_x_at--544--10311Chr01:35768213..35768237 (25 bp)
TTTCTTGTCGCTACAAAGGGCTTCT
LOC_Os01g61250
Os.23688.1.A1_x_at--262--1311Chr01:35768267..35768291 (25 bp)
AGATGATTCATGCTTCGTCTTCTGT
LOC_Os01g61250
Os.23688.1.A1_x_at--952--2111Chr01:35768341..35768365 (25 bp)
ACATGGATTCTTCGCATAGCATAGA
LOC_Os01g61250
Os.23688.1.A1_x_at--991--6731Chr01:35768396..35768420 (25 bp)
GTTCATTCCCTCTGTTTGTAGTTAG
LOC_Os01g61250
Os.23688.1.A1_x_at--215--5031Chr01:35768420..35768444 (25 bp)
GCAGTCCATATTAACCATCGGGCTT
LOC_Os01g61250
Os.23688.1.A1_x_at--425--4331Chr01:35768434..35768458 (25 bp)
CCATCGGGCTTACTGAGTTGATTCT
LOC_Os01g61250
Target Sequence 
TCTTTTAATACATATCCCCGGACCTATGATCTTGTTCACATGAGTTATCTCCTTCAGGGCCTCACAAATAGGTGTGATAT
CATTGAAGTAGCAGCAGAAATTGATAGGATACTTAGACCTGGAAAATGGTTCGTGTTGCAAGATACTGAGCAAGTGATTA
GAAAAATGGATCCAGTTCTTCGCTCTTTGCACTACAGGACTGCAATTGTGAAGCAACAATTTCTTGTCGCTACAAAGGGC
TTCTGGCGCCCANACAGTGCAGGTTNTGAGTCAAGATGATTCATGCTTCGTCTTCTGTTNCTGTTAGTAAAAATCAAACA
ACTGATTTGATTCTTTAAATTCTAATTACATGGATTCTTCGCATAGCATAGATGACACAAATTAGCCCCATATCAACGGT
GNGTTCATTCCCTCTGTTTGTAGTTAGCAGTCCATATTAACCATCGGGCTTACTGAGTTGATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23688.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis