Browse Element(s) Details


OsAffx.21770.1.S1_at

Description tigr:9629.m06025
TID=OsAffx.21770.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pathogenesis-related protein Bet v I family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6121011/11Pathogenesis-related protein Bet v I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61150Os.33817.1.S1_at11/111+35723015..35727097PX domain containing protein, expressed
LOC_Os01g61160Os.34310.1.S1_at11/111+35729644..35732156laccase, putative, expressed
LOC_Os01g61170Os.55669.1.S1_at1/111+35734779..35735447prenylated rab acceptor, putative
LOC_Os01g61180Os.27852.1.S1_at11/111+35736139..35738548Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.2.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.1.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61200Os.14101.3.S1_at11/111+35742555..35744023GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61210OsAffx.21770.1.S1_at11/111+35747882..35748508Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os01g61220NANA1+35754317..35754886hypothetical protein
LOC_Os01g61230Os.42521.1.S1_at10/111+35757730..35759729NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g61240OsAffx.11683.1.S1_at10/111+35760750..35762644Gamma interferon inducible lysosomal thiol reductase family protein
LOC_Os01g61250Os.23688.1.A1_x_at11/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61250Os.42520.1.A1_x_at8/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61260NANA1+35769811..35770761retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21770.1.S1_at--960--4211Chr01:35748098..35748122 (25 bp)
CCGCAGGCGTACAAGAAGTTCATCA
LOC_Os01g61210
OsAffx.21770.1.S1_at--27--1471Chr01:35748111..35748135 (25 bp)
AGAAGTTCATCAAGAGCTGCCGCCT
LOC_Os01g61210
OsAffx.21770.1.S1_at--582--7291Chr01:35748176..35748200 (25 bp)
GTGCGCGTCGTGTCCGGGCTGCCGG
LOC_Os01g61210
OsAffx.21770.1.S1_at--796--7371Chr01:35748302..35748326 (25 bp)
GTGACCACCGTCCACGAGGCGGCGG
LOC_Os01g61210
OsAffx.21770.1.S1_at--109--8611Chr01:35748345..35748369 (25 bp)
TGGTCGAGTCGTACGTGGTGGACGT
LOC_Os01g61210
OsAffx.21770.1.S1_at--930--8151Chr01:35748378..35748402 (25 bp)
GGAACACCTGGGAGGAGACGCGCGT
LOC_Os01g61210
OsAffx.21770.1.S1_at--554--1391Chr01:35748393..35748417 (25 bp)
AGACGCGCGTGTTCGTGGACACGAT
LOC_Os01g61210
OsAffx.21770.1.S1_at--905--4131Chr01:35748398..35748422 (25 bp)
CGCGTGTTCGTGGACACGATCGTGC
LOC_Os01g61210
OsAffx.21770.1.S1_at--310--1891Chr01:35748413..35748437 (25 bp)
ACGATCGTGCGCTGCAACCTCCAGT
LOC_Os01g61210
OsAffx.21770.1.S1_at--159--2631Chr01:35748428..35748452 (25 bp)
AACCTCCAGTCGCTTGCGCGAACGG
LOC_Os01g61210
OsAffx.21770.1.S1_at--334--10711Chr01:35748441..35748465 (25 bp)
TTGCGCGAACGGTCGAGCGGCTCGC
LOC_Os01g61210
Target Sequence 
CCGCAGGCGTACAAGAAGTTCATCAAGAGCTGCCGCCTCGTGGACGGCGACGGCGGCGAGGTCGGGTCGGTGCGGGAGGT
GCGCGTCGTGTCCGGGCTGCCGGCCACGAGCAGCCGCGAGCGGCTCGAGGTCCTGGACGACGACCGCCGCGTGCTCAGCT
TCCGGATCGTCGGCGGCGAGCACCGCCTCGCCAACTACCGCTCGGTGACCACCGTCCACGAGGCGGCGGCGCCGGCGATG
GCCGTGGTGGTCGAGTCGTACGTGGTGGACGTGCCGCCGGGGAACACCTGGGAGGAGACGCGCGTGTTCGTGGACACGAT
CGTGCGCTGCAACCTCCAGTCGCTTGCGCGAACGGTCGAGCGGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis