Browse Element(s) Details


Os.27852.1.S1_at

Description gb:AK111814.1
DB_XREF= gi:37988477
TID=Os.27852.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leucine zipper protein (B1088C09.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013133L14, full insert sequence.
FL= gb:AK111814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6118011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61120Os.26965.1.S1_at11/111+35713613..35718462expressed protein
LOC_Os01g61130NANA1+35719409..35720698retrotransposon protein, putative, LINE subclass
LOC_Os01g61140OsAffx.21477.2.S1_at1/111+35721084..35722483retrotransposon protein, putative, unclassified
LOC_Os01g61150Os.33817.1.S1_at11/111+35723015..35727097PX domain containing protein, expressed
LOC_Os01g61160Os.34310.1.S1_at11/111+35729644..35732156laccase, putative, expressed
LOC_Os01g61170Os.55669.1.S1_at1/111+35734779..35735447prenylated rab acceptor, putative
LOC_Os01g61180Os.27852.1.S1_at11/111+35736139..35738548Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.2.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.1.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61200Os.14101.3.S1_at11/111+35742555..35744023GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61210OsAffx.21770.1.S1_at11/111+35747882..35748508Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os01g61220NANA1+35754317..35754886hypothetical protein
LOC_Os01g61230Os.42521.1.S1_at10/111+35757730..35759729NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g61240OsAffx.11683.1.S1_at10/111+35760750..35762644Gamma interferon inducible lysosomal thiol reductase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27852.1.S1_at--138--4931Chr01:35737972..35737996 (25 bp)
GCTTGGGCAAAGGTCATGTCAGTGT
LOC_Os01g61180
Os.27852.1.S1_at--641--8491Chr01:35738013..35738037 (25 bp)
TGGCATTGGTAGTCTCCCTGCAAAG
LOC_Os01g61180
Os.27852.1.S1_at--593--2931Chr01:35738035..35738059 (25 bp)
AAGGCCTTGCTACAAAAACTGCGGA
LOC_Os01g61180
Os.27852.1.S1_at--862--4671Chr01:35738055..35738079 (25 bp)
GCGGATGTTTAATGGCTACTTGGAA
LOC_Os01g61180
Os.27852.1.S1_at--982--6651Chr01:35738193..35738217 (25 bp)
GTTGAAATCATCTCCGGAAGCTGCA
LOC_Os01g61180
Os.27852.1.S1_at--524--2691Chr01:35738210..35738234 (25 bp)
AAGCTGCACAGGACTTGTTCATCAA
LOC_Os01g61180
Os.27852.1.S1_at--411--8791Chr01:35738225..35738249 (25 bp)
TGTTCATCAAGCATTCCCCAGAAGA
LOC_Os01g61180
Os.27852.1.S1_at--495--5391Chr01:35738254..35738278 (25 bp)
GAAGCACGAATCCAGCACCTGTTTG
LOC_Os01g61180
Os.27852.1.S1_at--213--10071Chr01:35738310..35738334 (25 bp)
TAGTCACTATGCTTCTATAGCTGTG
LOC_Os01g61180
Os.27852.1.S1_at--567--10851Chr01:35738338..35738362 (25 bp)
TTGGTGTCATTGTTGCTGCTATGGT
LOC_Os01g61180
Os.27852.1.S1_at--708--8271Chr01:35738401..35738425 (25 bp)
GGCATTGTTCCATAAGGTTTACTTT
LOC_Os01g61180
Target Sequence 
GCTTGGGCAAAGGTCATGTCAGTGTTGCAGACGGGTGGTCCTGGCATTGGTAGTCTCCCTGCAAAGGCCTTGCTACAAAA
ACTGCGGATGTTTAATGGCTACTTGGAAGAGATATGTGCTATCCAGTCAGAATGGGTGATTGCAGATGAGCAGCTGCGCG
AGGATGTTAGGGCAGCAATAACAGATTCTGTGAAGTCTGCATATATGGGCTTGATTTCAAGGTTGAAATCATCTCCGGAA
GCTGCACAGGACTTGTTCATCAAGCATTCCCCAGAAGATGTNGAAGCACGAATCCAGCACCTGTTTGAAGGAGTGTCCAA
GTGATTATTAGTTCATTATAGTCACTATGCTTCTATAGCTGTGATTTTGGTGTCATTGTTGCTGCTATGGTGGATATCTG
AACACTGGTGATGNNNNNNNNNNNCCATTATGTGTTTGGTGGCATTGTTCCATAAGGTTTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis