Browse Element(s) Details


Os.14101.1.S1_at

Description gb:AK122173.1
DB_XREF= gi:37991819
TID=Os.14101.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GDSL-motif lipasehydrolase (B1088C09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148K20, full insert sequence.
FL= gb:AK122173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6119011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61120Os.26965.1.S1_at11/111+35713613..35718462expressed protein
LOC_Os01g61130NANA1+35719409..35720698retrotransposon protein, putative, LINE subclass
LOC_Os01g61140OsAffx.21477.2.S1_at1/111+35721084..35722483retrotransposon protein, putative, unclassified
LOC_Os01g61150Os.33817.1.S1_at11/111+35723015..35727097PX domain containing protein, expressed
LOC_Os01g61160Os.34310.1.S1_at11/111+35729644..35732156laccase, putative, expressed
LOC_Os01g61170Os.55669.1.S1_at1/111+35734779..35735447prenylated rab acceptor, putative
LOC_Os01g61180Os.27852.1.S1_at11/111+35736139..35738548Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.2.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.1.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61200Os.14101.3.S1_at11/111+35742555..35744023GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61210OsAffx.21770.1.S1_at11/111+35747882..35748508Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os01g61220NANA1+35754317..35754886hypothetical protein
LOC_Os01g61230Os.42521.1.S1_at10/111+35757730..35759729NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g61240OsAffx.11683.1.S1_at10/111+35760750..35762644Gamma interferon inducible lysosomal thiol reductase family protein
LOC_Os01g61250Os.23688.1.A1_x_at11/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61250Os.42520.1.A1_x_at8/111+35763608..35768583dehydration-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14101.1.S1_at--49--6611Chr01:35743718..35743742 (25 bp)
GTTGGACAGGTCCTTCTCCAGGAAT
LOC_Os01g61190
Os.14101.1.S1_at--716--5211Chr01:35743751..35743775 (25 bp)
GAATTCTTTGAGCTGCAGCTTCTCA
LOC_Os01g61190
Os.14101.1.S1_at--705--6151Chr01:35743781..35743805 (25 bp)
GAGGTCTGGAACAAGCCGGCCATTG
LOC_Os01g61190
Os.14101.1.S1_at--703--9771Chr01:35743848..35743872 (25 bp)
TAAGGAGCATGGTTTCCCACAGCCA
LOC_Os01g61190
Os.14101.1.S1_at--320--2531Chr01:35743938..35743962 (25 bp)
AACTTTGGCTGAGTTCTCTTGGAGG
LOC_Os01g61190
Os.14101.1.S1_at--947--7291Chr01:35744015..35744039 (25 bp)
GTGCGCCATGAGAAGGAACCCCTTG
LOC_Os01g61190
Os.14101.1.S1_at--1134--6791Chr01:35744045..35744069 (25 bp)
GTTTTAATACTCTCCAGACTCCAGT
LOC_Os01g61190
Os.14101.1.S1_at--58--5731Chr01:35744061..35744085 (25 bp)
GACTCCAGTTGGTTCTTTGTTATAT
LOC_Os01g61190
Os.14101.1.S1_at--1139--1151Chr01:35744140..35744164 (25 bp)
AGTAAGTAATGCATATCTCCCGGAT
LOC_Os01g61190
Os.14101.1.S1_at--1056--7231Chr01:35744202..35744226 (25 bp)
GTCCTTTTTCTTGACTCGAGTTGGT
LOC_Os01g61190
Os.14101.1.S1_at--538--611Chr01:35744282..35744306 (25 bp)
ATGCGATGCAAGCATGTGCCCTTCA
LOC_Os01g61190
Target Sequence 
GTTGGACAGGTCCTTCTCCAGGAATGGTGGTGAGAATTCTTTGAGCTGCAGCTTCTCATTGAGGAGGTCTGGAACAAGCC
GGCCATTGGAGAACCTCCCTGTTGGCTTTCTTCCTGGGAAGTTCCTGCCGTAAGGAGCATGGTTTCCCACAGCCAATGTT
GGGATATAATTGTTGTTGCCGGTGTCGAGAACGGAGTCGCCAAAGTAGAAGATAGCCGAGAACTTTGGCTGAGTTCTCTT
GGAGGTGGAAATGGTGGTGGTGGAGGAAAGGAGGAGCACTACTAGGAGTAGAATGGTGTGCGCCATGAGAAGGAACCCCT
TGCCTTGGTTTTAATACTCTCCAGACTCCAGTTGGTTCTTTGTTATATTTCCAGGGGGGTAATACATGCCTAATAAATTG
GGGAAATATTTAGCTGATTCGCAGTAAGTAATGCATATCTCCCGGATATGTACTATTTAATGTTTTCTTTTGCATGAAAC
TGCTGTCCTTTTTCTTGACTCGAGTTGGTTGTTTTTGGCAGAACTGGAGATTTTGTATTTACTACTCTACAGTAGATGGT
TAGCATGCGATGCAAGCATGTGCCCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis