Browse Element(s) Details


Os.42521.1.S1_at

Description gb:CF326471
DB_XREF= gi:33801195
DB_XREF=JMT1--06-C12.g1
CLONE=JMT1--06-C12
TID=Os.42521.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cinnamoyl CoA reductase (B1088C09.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6123010/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61170Os.55669.1.S1_at1/111+35734779..35735447prenylated rab acceptor, putative
LOC_Os01g61180Os.27852.1.S1_at11/111+35736139..35738548Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.2.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.1.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61200Os.14101.3.S1_at11/111+35742555..35744023GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61210OsAffx.21770.1.S1_at11/111+35747882..35748508Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os01g61220NANA1+35754317..35754886hypothetical protein
LOC_Os01g61230Os.42521.1.S1_at10/111+35757730..35759729NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g61240OsAffx.11683.1.S1_at10/111+35760750..35762644Gamma interferon inducible lysosomal thiol reductase family protein
LOC_Os01g61250Os.23688.1.A1_x_at11/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61250Os.42520.1.A1_x_at8/111+35763608..35768583dehydration-responsive protein, putative, expressed
LOC_Os01g61260NANA1+35769811..35770761retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_at2/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_x_at1/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42521.1.S1_at--495--3031Chr01:35759035..35759059 (25 bp)
AATCCAGGCTTGGTATTGGGCCCAA
LOC_Os01g61230
Os.42521.1.S1_at--674--9891Chr01:35759076..35759100 (25 bp)
TACTTCTAGTCTCCATATGCTGCTT
LOC_Os01g61230
Os.42521.1.S1_at--86--631NONE
ATGCTGCTTCAGATTCTCGGAGGCC
NONE
Os.42521.1.S1_at--524--4411Chr01:35759191..35759215 (25 bp)
GCCAGAGGTTTGACATCGATGACTT
LOC_Os01g61230
Os.42521.1.S1_at--120--9391Chr01:35759206..35759230 (25 bp)
TCGATGACTTCTACATTGGCTGTGT
LOC_Os01g61230
Os.42521.1.S1_at--86--5131Chr01:35759247..35759271 (25 bp)
GCACAGTCCGCGGTAGTGATCTATG
LOC_Os01g61230
Os.42521.1.S1_at--492--2131Chr01:35759285..35759309 (25 bp)
ACAGGGACGCCACTTATGCATCGAG
LOC_Os01g61230
Os.42521.1.S1_at--1159--9051Chr01:35759301..35759325 (25 bp)
TGCATCGAGTCCATAGAGCGTCTGA
LOC_Os01g61230
Os.42521.1.S1_at--876--9811Chr01:35759339..35759363 (25 bp)
TAAACTTGCTGAGCTTTACCCTGAA
LOC_Os01g61230
Os.42521.1.S1_at--385--5211Chr01:35759361..35759472 (25 bp)
GAATTCCCGATCCACAGAATCCAGG
LOC_Os01g61230
Os.42521.1.S1_at--5--8631Chr01:35759531..35759555 (25 bp)
TGGTGTGCATTTCATTCCGTTCGAA
LOC_Os01g61230
Target Sequence 
AATCCAGGCTTGGTATTGGGCCCAATGTTGATGCCATCCCCTACTTCTAGTCTCCATATGCTGCTTCAGATTCTCGGAGG
CCAGAGGTTTGACATCGATGACTTCTACATTGGCTGTGTCGATGTCAGAGATGTGGCACAGTCCGCGGTAGTGATCTATG
AGAACACATCGGCACAGGGACGCCACTTATGCATCGAGTCCATAGAGCGTCTGATTGATTTCCATGATAAACTTGCTGAG
CTTTACCCTGAATTCCCGATCCACAGAATCCAGGAGGATAAACAAGGGTGGGTGGTGAGATCAAAGGCTGCCTCGAAGAA
GCTAATTGATCTTGGTGTGCATTTCATTCCGTTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis