Browse Element(s) Details


Os.55669.1.S1_at

Description gb:AK108526.1
DB_XREF= gi:32993735
TID=Os.55669.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B09, full insert sequence.
FL= gb:AK108526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g611701/11prenylated rab acceptor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61120Os.26965.1.S1_at11/111+35713613..35718462expressed protein
LOC_Os01g61130NANA1+35719409..35720698retrotransposon protein, putative, LINE subclass
LOC_Os01g61140OsAffx.21477.2.S1_at1/111+35721084..35722483retrotransposon protein, putative, unclassified
LOC_Os01g61150Os.33817.1.S1_at11/111+35723015..35727097PX domain containing protein, expressed
LOC_Os01g61160Os.34310.1.S1_at11/111+35729644..35732156laccase, putative, expressed
LOC_Os01g61170Os.55669.1.S1_at1/111+35734779..35735447prenylated rab acceptor, putative
LOC_Os01g61180Os.27852.1.S1_at11/111+35736139..35738548Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.2.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.1.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61200Os.14101.3.S1_at11/111+35742555..35744023GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61210OsAffx.21770.1.S1_at11/111+35747882..35748508Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os01g61220NANA1+35754317..35754886hypothetical protein
LOC_Os01g61230Os.42521.1.S1_at10/111+35757730..35759729NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55669.1.S1_at--307--2971Chr01:35734814..35734838 (25 bp)
AATGGCAACACTACCAGCAGGCTGC
LOC_Os01g61170
Os.55669.1.S1_at--90--491Chr01:35734743..35734767 (25 bp)
ATCTGGTAGGATTCTTGGGCTCGTG
NONE
Os.55669.1.S1_at--285--3171Chr01:35734700..35734724 (25 bp)
AATTGGCATGGATCTGGTTCGTCGG
NONE
Os.55669.1.S1_at--200--6411Chr01:35734690..35734714 (25 bp)
GATCTGGTTCGTCGGCTGTAGCTAA
NONE
Os.55669.1.S1_at--1093--8751Chr01:35734674..35734698 (25 bp)
TGTAGCTAATTGGTTGCCGCTCTGC
NONE
Os.55669.1.S1_at--830--5031Chr01:35734619..35734643 (25 bp)
GCAGATCATATTTTGCCTTCTAATA
NONE
Os.55669.1.S1_at--594--6411Chr01:35734574..35734598 (25 bp)
GATCTGCTAGATTTGTACTTCACTT
NONE
Os.55669.1.S1_at--624--5151Chr01:35734503..35734527 (25 bp)
GCAACTCAGTATGTCTTGTGCTCTG
NONE
Os.55669.1.S1_at--805--7311Chr01:35734486..35734510 (25 bp)
GTGCTCTGTTCTTTCAAGTAACTGT
NONE
Os.55669.1.S1_at--781--2811Chr01:35734471..35734495 (25 bp)
AAGTAACTGTACACCGACTCCTTAG
NONE
Os.55669.1.S1_at--1059--1971Chr01:35734455..35734479 (25 bp)
ACTCCTTAGCAAGTTTATGGTCCTT
NONE
Target Sequence 
AATGGCAACACTACCAGCAGGCTGCTCTCCTTCCTCGGGGCGCCCGGATCTGGGGTTTGATGCGGCGCAGGATCTGGTAG
GATTCTTGGGCTCGTGGAATTTATTTTGAGTACGAATTGGCATGGATCTGGTTCGTCGGCTGTAGCTAATTGGTTGCCGC
TCTGCTTGTGCTTAATTGTGAGTAGTTATGAATATGCAGATCATATTTTGCCTTCTAATATGTGGTTCGAATTATGCAAA
GATCTGCTAGATTTGTACTTCACTTGTTAGTTTGAATCTGAGTGGTGACTGGTAAGAATTGTTAGATGTCAGCAACTCAG
TATGTCTTGTGCTCTGTTCTTTCAAGTAACTGTACACCGACTCCTTAGCAAGTTTATGGTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis